Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0323 ATGGGAAGTGGAACAATTGTGGATGGTGTTCGTCGCTGGTTTCATCGTCGAATTTCTGCTCCTTCTTCCTCTACAACTATTTTTAATAATAATAATAATAATGGTGGTATAGTTATTAATAATAATATTAATAATTCCGATAGTAATTATAATACTACTAATCATAGCAGTAGTGCTAAGAACGAGCACAATAATGGCGATCGAGAAGGTATTGTTGGGCGAATAGAGGAGGAGGAGGAGGTTGTGGTGTTGGATTTTGATTTTTCTGGTTTGAAGAGAATCAGAGTACCTAAGCGGGTCCCCTTTATAGTTGCTGACCCTTCTGCTTCCATGGATTCCCACAAGAAGGGTGGGCTAGAAACAGAATTCTTCACAGAGTATGGAGAGGCAAGCCGATACCAGATTCAAGAAGTGATTGGAAAAGGAAGCTACGGCGTTGTAGGTTCTGCAGTTGATACGTATACTGGAGAAAGAGTTGCGATAAAGAAAATTAACGATGTCTTTGAGCATGTTTCTGATGCCACAAGGATTCTAAGAGAAATTAAGCTTCTTCGATTGCTACGTCATCCAGATATTGTGGAAATAAAACATATCATGCTTCCTCCTTCCAGACGGGAATTTAGAGACGTCTATGTTGTTTTCGAGTTGATGGAATCTGATCTTCACCAAGTAATTAAGGCAAATGATGATCTCACTCCTGAGCATTATCAATTTTTCTTGTATCAGCTTCTTCGTGGTCTGAAGTATATACATACAGCAAATGTATTTCATCGTGATTTAAAGCCAAAAAATATTCTAGCTAATGCTGACTGCAAACTAAAGATCTGTGATTTCGGGCTTGCTCGTGTCTCTTTTAATGATGCCCCATCAGCTATTTTCTGGACAGACTATGTTGCAACTCGGTGGTATCGCGCTCCTGAGCTCTGTGGTTCGTTTTTCTCAAAATACACTCCTGCAATTGATATTTGGAGTATAGGATGCATCTTTGCAGAGATGGTTACTGGAAAGCCACTTTTTCCTGGAAAGAATGTGGTGCATCAATTGGATATTATGACCGATTTGCTTGGCACACCAGCAGCTGACTCCATTGCCAGGATTCGGAATGAAAAGGCTAGGCGGTATCTTAGCAGTATGCGGAAAAAGCCAGCAGTTCCTTTCACACAAAAGTTTCCTCATTCTGATCCATCGGCTCTTCGCTTGCTGGAACGCATGCTTGCATTTGATCCTAAAGATCGTCCTACAGCTGAAGAGGCACTAGCCGACCCTTACTTTCATGGTTTGGCAAATGTGGATCGTGAACCATCGACTCAACCAATTTCAAAACTCGAGTTTGAATTTGAGAGGAGGAAACTGACAAAAGATGACGTTAGAGAGTTAATTTATCGAGAGATTTTAGAGTATCATCCCCAGATGCTGCAGGAGTATTTGCGCAATGGAGATCAAACTAGCTTTATGTACCCAAGTGGTGTTGATCGGTTTAAGCGTCAGTTTGCACATCTGGAGGAACACCATGGTAAAGGTGAAAGAGGCTCTCCACTTCAAAGGCAGCATGCATCCTTACCTAGAGAGCGGGTTTGTGAACCCAAGGAAGAGACAAGTGAGCAAAATATAGAGAGAAGTGCTGCTTCTGTTGCCACGTCCCTTCAGAGTCCCCCAAGACAATCTAACTGCTCAGGAAACTCCACCTCAGATACACAGAATGGAAATAACAAACCAAACTACAGTGCTAGGAGTCTTCTCTTGAAGAGCGCTAGCATGAGTGCCTCCAAGTGTATAGGGACAAAATCGAAAAAAGATTCAGAGGAGGAACAAATTGCTGAAGAGGCGGTTGATGGGTTGTCTGACAAGGTTGAAGACCTTCATGTTTGA 1869 42.0 MGSGTIVDGVRRWFHRRISAPSSSTTIFNNNNNNGGIVINNNINNSDSNYNTTNHSSSAKNEHNNGDREGIVGRIEEEEEVVVLDFDFSGLKRIRVPKRVPFIVADPSASMDSHKKGGLETEFFTEYGEASRYQIQEVIGKGSYGVVGSAVDTYTGERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDVYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMVTGKPLFPGKNVVHQLDIMTDLLGTPAADSIARIRNEKARRYLSSMRKKPAVPFTQKFPHSDPSALRLLERMLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRNGDQTSFMYPSGVDRFKRQFAHLEEHHGKGERGSPLQRQHASLPRERVCEPKEETSEQNIERSAASVATSLQSPPRQSNCSGNSTSDTQNGNNKPNYSARSLLLKSASMSASKCIGTKSKKDSEEEQIAEEAVDGLSDKVEDLHV 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2685649 2693194 + Conep13aG0034200.1 Cone13ag0323 450710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0323 622 MobiDBLite consensus disorder prediction 594 622 - -
Cone13ag0323 622 Gene3D Phosphorylase Kinase; domain 1 149 470 - -
Cone13ag0323 622 MobiDBLite consensus disorder prediction 503 622 - -
Cone13ag0323 622 CDD STKc_TDY_MAPK 132 469 - -
Cone13ag0323 622 FunFam Mitogen-activated protein kinase 122 227 - -
Cone13ag0323 622 ProSitePatterns Protein kinases ATP-binding region signature. 139 163 IPR017441 GO:0005524(InterPro)
Cone13ag0323 622 Pfam Protein kinase domain 133 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0323 622 MobiDBLite consensus disorder prediction 520 536 - -
Cone13ag0323 622 ProSitePatterns MAP kinase signature. 168 271 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0323 622 SUPERFAMILY Protein kinase-like (PK-like) 129 429 IPR011009 -
Cone13ag0323 622 FunFam Mitogen-activated protein kinase 219 447 - -
Cone13ag0323 622 MobiDBLite consensus disorder prediction 537 593 - -
Cone13ag0323 622 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 130 465 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cone13ag0323 622 FunFam Mitogen-activated protein kinase 448 470 - -
Cone13ag0323 622 SMART serkin_6 133 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0323 622 ProSiteProfiles Protein kinase domain profile. 133 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0323 622 Gene3D Transferase(Phosphotransferase) domain 1 219 447 - -
Cone13ag0323 622 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0323 Cone-Chr13:2685649 Cone19ag0767 Cone-Chr19:6232714 3.34E-261 dispersed
Cone13ag0323 Cone-Chr13:2685649 Cone13ag0331 Cone-Chr13:2766449 3.55E-46 proximal
Cone2ag0757 Cone-Chr2:33377398 Cone13ag0323 Cone-Chr13:2685649 1.69E-276 transposed
Cone13ag0323 Cone-Chr13:2685649 Cone19ag0365 Cone-Chr19:3046764 1.17E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82008 PF00849 PseudoU_synth_2 1.50E-29 CL0649 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0323 - - - 0.0