Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0331 ATGTCTGAGCTCGAAACTTCTAAGAAAATTGCCGATAGATATCTGAAGCTCGGCCAACTCGGTGAAGGTACCTATGGAGTTGTATTCAAAGCCTTTGATACGAAGACAGGTCAGACAGTTGCAATCAAGAAAATTCGACTTGGGAAGCAGAAAGAGGGAGTCAATTTTACAGCTCTTAGAGAAATTAAATTGCTTAAAGAGCTCAAATATCCACATATAATTGAGTTGACAGATGCTTTCTCTCATAAGGAGAACTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCGGTCATACGTGATCGAAACATATTTCTCTCATCAGCTGACATAAAATCCTACATACAGATGACACTGAAAGGCCTTGCTATTTGCCACAAGAAATGGATCTTACATAGGGACATGAAGCCAAACAATTTGTTGATAGGATGTAATGGACAACTTAAACTTGCAGATTTTGGTTTGGCTCGAATATTTGGTAGTCCAGATCGCAGATTTACTCACCAGGTATTTGCTCGATGGTATAGAGCACCTGAGCTGCTGTTCGGTACCAAGCAGTATGGTTCTGGGGTAGATGTTTGGGCAGCAGCTTGTATATTTGCTGAGCTTCTCCTCCGTCGACCTTTTCTCCAGGGTTCGAGTGACATTGATCAATTAGGAAAGATCTTTGCAGCTTTTGGAACACCTGCACCTTCTCAGTGGCCTGATATGGCATTCCTGCCTGATTATGTGGAGTACCAATATGTTCCTTCGCCTCCTTTACGATCCTTATTTCCAATGGCTAGTGATGACACTCTAGATCTCCTAGCAAAGATGTTTACGTATGATCCCAAATCCAGAATTTCAGCTCAGCAGGCATTAGAGCACAGGTACTTTTCTTCAGCTCCTCCACCTACTGATCCTGATAAATTGCCTAGACCTTGTCGAAAGCACGACTCGGGGGCTCCAAACGTTAACCTGAATGAGGGTCCCACACTGCTCTCACCTCCAAGAAAATCAAGAAGAGTAATGCCGGAACGTGAAGGATTTGGAGGAAATGCACACCGAGGAGATAAATTGGATGATCATGGTAATGATGTTAGACAAGCATGTCCTGAAAATGCAAGCAAGAACGAACCAGTGCCTATGTCAGTCGATTTTTCAATTTTTGGTGCTAAACCTCCAAGTAGACCAACAATTAACAGTGCTGACAGATCACATCTGAAAAGGAAATTAGATCTCGAGTTCCAACAATGA 1242 42.59 MSELETSKKIADRYLKLGQLGEGTYGVVFKAFDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKYPHIIELTDAFSHKENLHLVFEFMETDLEAVIRDRNIFLSSADIKSYIQMTLKGLAICHKKWILHRDMKPNNLLIGCNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPAPSQWPDMAFLPDYVEYQYVPSPPLRSLFPMASDDTLDLLAKMFTYDPKSRISAQQALEHRYFSSAPPPTDPDKLPRPCRKHDSGAPNVNLNEGPTLLSPPRKSRRVMPEREGFGGNAHRGDKLDDHGNDVRQACPENASKNEPVPMSVDFSIFGAKPPSRPTINSADRSHLKRKLDLEFQQ 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2766449 2771850 + Conep13aG0035000.1 Cone13ag0331 450718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0331 413 PANTHER CELL DIVISION PROTEIN KINASE 14 294 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
Cone13ag0331 413 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524(InterPro)
Cone13ag0331 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0331 413 SMART serkin_6 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0331 413 FunFam Cyclin-dependent kinase D-1 5 94 - -
Cone13ag0331 413 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0331 413 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0331 413 MobiDBLite consensus disorder prediction 335 363 - -
Cone13ag0331 413 Gene3D Phosphorylase Kinase; domain 1 11 94 - -
Cone13ag0331 413 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Cone13ag0331 413 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Cone13ag0331 413 MobiDBLite consensus disorder prediction 294 413 - -
Cone13ag0331 413 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Cone13ag0331 413 CDD STKc_CDK7 13 307 IPR037770 GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro)
Cone13ag0331 413 MobiDBLite consensus disorder prediction 398 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0331 Cone-Chr13:2766449 Cone19ag0319 Cone-Chr19:2517131 3.14E-228 dispersed
Cone13ag0323 Cone-Chr13:2685649 Cone13ag0331 Cone-Chr13:2766449 3.55E-46 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82009 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0331 K02202 - mdm:103415531 707.212