Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0338 ATGCAAACTGCAAAACCCATATGGGTCTTCCTCTTCCTTTTGATCCTTCCCATTGCAAAACCAGATCTGGCTTCAGACAGAGCAGCTCTTCTAGCCCTTCGTTCTTCCGTAGGTCGGACCACCTTACTCTGGAACACAACGAACCAAAACCCATGTTCTTGGACCGGAGTCAAGTGCGAGTCAAACCGGGTCACTGTTCTCCGTCTACCTGGCGTTTCACTCTACGGTCAAATACCAAACGGCGTTTTGGGCAACCTGACCGGTCTTCGCACTCTCAGCCTCAGATTCAACGCCTTAACTGGTCCTTTGCCTTTAGATCTCGCTAAATGTACTAATCTACGTAACTTATATTTACAAGGTAATGACTTTTCTAGTCAAATTCCTGTCTTTTTGTTTCAACTTAAAGACCTTGTTCGGCTCAATTTGGGTTCCAACAACTTCTCCGGTGAGATCTCGCTGGAGTTTAACAGCCTCACACGGCTGAGGACTCTGTTTTTGGAGAATAACCAGCTTAATGGGTCCATTCCGGACTTGAACCTTTCTAAACTCGACCAGTTCAATGTCTCTAACAATCTGCTTAACGGGTCAGTTCCCCTGAGATTGCAGTCGTTTCCTTCGATGGCTTTTCTAGGGAACTTGCTTTGTGGGCCCCCTCTTGAGAAGGCCTGCTCTAGAAATGACACTGAGCCAAAGTCAGTGGATTTAGATTTAAATCTTAACAATAGGGAGAAGAGGAAGAAGAAGTTGTCAGGTGGTGCTATTGCTGGTATTGTGATTGGATCCTTTGTGGGTTTATTTGTAATTATTGTAATATCATTGTTTTTGTGCCTTAAGAAGAGAAGCAAGAAAACAAGCTCAGCAGATTTTGCCACCACTAAACTTCCGGAAGTAGAAATTCCGCTTGATAAACGACCCGTCGGAGAGGTAGAAAATTGTGAGGCCTACGGTAGTAATGAGTACTCTTCGGTAGGACTCTCGGCTATGGTAGGGAATGGGAAAGGGGAAGAAGTGAATAATTTTAACGGTGGTGTAGGTAAGAAGTTGGTGTTTTTTAGTAATGGAGGGAAGGTGTTTGATTTGGAAGATTTGTTGAGAGCTTCTGCCGAGGTTTTGGGGAAGGGGACGTTTGGTACGACTTATAAGGCGGTTTTGGAGTTTGGAAACTTGATGGCTGTGAAGAGGCTGAAAGATGTGATCATTTCTGAGAGAGAGTTTAGGGAAAAGATTCAAGTAGTGGGAGGAATGGAGCATGAGAATTTGGTCCCTCTTAGAGCCTATTATCACAGTGCAGATGAGAAGCTTCTTGTCTATGACTATATGCCCATGGGAAGCTTATCTGCTCTTTTGCATGGAAACAAAGGAGCAGGAAGGACTCCATTGAATTGGGAAATGAGATCATCCATTGCCCTTGGAGCAGCCCGTGCCATCAATTACTTACACTCTCAAGGCCCAAACATCTCCCACGGAAACATTAAATCATCCAATGTCCTCCTCACGAAATCGTACGATGCTCGAGTCTCCGATTTTGGACTGGCCCATCTTGTTGGCCCTCCATCCACCCTCAACCGGGTTGCTGGTTATCGTGCCCCAGAGGTGACTGATCCCCGAAAAGTATCCCAGAAGGCTGATGTTTATAGCTTTGGAGTGTTACTCTTGGAGCTGTTGACGGGTAAAACTCCCATTCATGCCTTCTTAAATGAAGATGGCGTCGACCTTCCCAGGTGGGTCCAGTCAGTGGTTCGTGAGGAGTGGACCTCAGAAGTCTTTGACCTCGAACTGCTTAGGTACCAGAATGTTGAGGAGGAGATGGTTCAGTTGCTTCAACTAGCAGTAGATTGTGCTACTCAATATCCTGACCATCGCCCTTCGATGTTGGAAGTGACTAGACGCATTGAAGAGTTATGCCGTTCCAGCCTGCGCGAAGATCATGATGATTTGGAATCTGATATTGTTCGGGATTGA 1962 45.77 MQTAKPIWVFLFLLILPIAKPDLASDRAALLALRSSVGRTTLLWNTTNQNPCSWTGVKCESNRVTVLRLPGVSLYGQIPNGVLGNLTGLRTLSLRFNALTGPLPLDLAKCTNLRNLYLQGNDFSSQIPVFLFQLKDLVRLNLGSNNFSGEISLEFNSLTRLRTLFLENNQLNGSIPDLNLSKLDQFNVSNNLLNGSVPLRLQSFPSMAFLGNLLCGPPLEKACSRNDTEPKSVDLDLNLNNREKRKKKLSGGAIAGIVIGSFVGLFVIIVISLFLCLKKRSKKTSSADFATTKLPEVEIPLDKRPVGEVENCEAYGSNEYSSVGLSAMVGNGKGEEVNNFNGGVGKKLVFFSNGGKVFDLEDLLRASAEVLGKGTFGTTYKAVLEFGNLMAVKRLKDVIISEREFREKIQVVGGMEHENLVPLRAYYHSADEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEMRSSIALGAARAINYLHSQGPNISHGNIKSSNVLLTKSYDARVSDFGLAHLVGPPSTLNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKTPIHAFLNEDGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCATQYPDHRPSMLEVTRRIEELCRSSLREDHDDLESDIVRD 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2885015 2887765 + Conep13aG0035700.1 Cone13ag0338 450725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0338 653 PANTHER OS05G0588300 PROTEIN 8 637 IPR050994 -
Cone13ag0338 653 FunFam pollen receptor-like kinase 1 334 439 - -
Cone13ag0338 653 Gene3D Ribonuclease Inhibitor 134 224 IPR032675 -
Cone13ag0338 653 ProSiteProfiles Protein kinase domain profile. 365 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0338 653 FunFam Probable inactive receptor kinase RLK902 23 179 - -
Cone13ag0338 653 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524(InterPro)
Cone13ag0338 653 Pfam Leucine rich repeat N-terminal domain 24 59 IPR013210 -
Cone13ag0338 653 Gene3D Ribonuclease Inhibitor 25 133 IPR032675 -
Cone13ag0338 653 FunFam Probable inactive receptor kinase At1g48480 440 642 - -
Cone13ag0338 653 Gene3D Transferase(Phosphotransferase) domain 1 440 651 - -
Cone13ag0338 653 Gene3D Phosphorylase Kinase; domain 1 341 439 - -
Cone13ag0338 653 ProSiteProfiles Leucine-rich repeat profile. 160 182 IPR001611 GO:0005515(InterPro)
Cone13ag0338 653 SUPERFAMILY L domain-like 44 210 - -
Cone13ag0338 653 SUPERFAMILY Protein kinase-like (PK-like) 369 629 IPR011009 -
Cone13ag0338 653 Pfam Protein kinase domain 369 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0338 653 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0338 Cone-Chr13:2885015 Cone2ag0777 Cone-Chr2:33756899 8.77E-247 dispersed
Cone9ag0028 Cone-Chr9:137036 Cone13ag0338 Cone-Chr13:2885015 7.75E-56 dispersed
Cone13ag0338 Cone-Chr13:2885015 Cone16ag0255 Cone-Chr16:2817920 2.68E-250 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82010 PF00550 PP-binding 8.40E-12 CL0314 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0338 - - - 0.0