Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0343 ATGCTACCAAATAACTCTTCCTCGTCTCTTCCCTCTAATTCCTCCGAGCCCTTCTCTTGCTTAGAAAACAGAAGCATCAACAACAACAACAACAAGAGGAAAAGGAGACCCGCTGGAACTCCAGATCCAGATGCTGAGGTGGTATCGCTCTCGCCCAAGACATTACTGGAATCAGATCGATACGTGTGTGAGATCTGCAACCAAGGGTTTCAAAGAGACCAGAATCTGCAGATGCATAGGAGGAGGCACAAAGTGCCATGGAAGCTGTTGAAGAGAGAGACGCCACTTGTGAGGAAGAGGGTGTTCGTCTGTCCCGAGCCTACCTGCTTGCACCACGATCCATGTCATGCTCTCGGAGATCTTGTCGGGATAAAGAAGCATTTTCGACGGAAACATAGCAGTCATAGACAGTGGGTTTGCGAGAAATGTTCCAAGGGCTATGCTGTTCAATCTGATTACAAGGCTCACCTTAAGACCTGTGGTACTAGAGGACATTCTTGTGATTGTGGTCGGGTTTTCTCAAGGGTAGAGAGTTTCATAGAACATCAAGATGCTTGCAACATGGGACGTCTGCAATCAGAATCACAGACAATATTCCAAACTCCATGTTTGTCTCGAACAGCTTCTAGTCCAAGCCCATCAAGTGATACCAACTTCAGCAGTACTCCGATTAGCATTACTGCTGCAGCTGCTGTTACTGTTGCTGCTAATCGAGCTGCTTTATTACTGGCGCCAAAGCCAACCGACCGAGATCAACACCACACTCATGATTCCACCATTGTTAGTAATAATACAAGATACAATCTAGAGCTTCAACTCTCCACCGCATCAAATAACACCATACAAGACGAAAACCGTTCTACCCGGTTGCAGCTCTCTATCGGTTCAAGCGATTTTGATCATGATCATCACACAAAAGAATCAAGAAAAGCTGTGATGAGAAATGATAATAATGGTAATGATAATAAAGAGAAAGTTGGTAACTGTGATCAGCAGGTGATTAGGGTGGCTATTGAAGAGAAGAGCTATGCAGAAGAAGCAAGAAAGCAAGCAAAGTTAGAGATTGATTTAGCCGAGAAAGAGCTTGCTAATGCAAAGAGAATGAGGCAGCAAGCCCAGATCGAGTTGAAAAAGGCTCAAGCTTTGAGACAAGAAGCGATCAAACAGATCAACTCTACCCTTCTTCAAATCACTTGTCAAAATTGTCAGCAACGGTTTCATCATCAAGAAAGAACGGTTAATATGAATACGAGTACGGTAAGCAGTACTGCTCCTCATGAAGAAAACTCGTTGGTGTTTAGTTACATGTCGGTGATTACTACAGATGGCGATCATAATAATAATCTGACCAGTAATATTGTTCTTCCCAAATATGTTAGTAATAACCCATGA 1392 43.46 MLPNNSSSSLPSNSSEPFSCLENRSINNNNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHRQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLQSESQTIFQTPCLSRTASSPSPSSDTNFSSTPISITAAAAVTVAANRAALLLAPKPTDRDQHHTHDSTIVSNNTRYNLELQLSTASNNTIQDENRSTRLQLSIGSSDFDHDHHTKESRKAVMRNDNNGNDNKEKVGNCDQQVIRVAIEEKSYAEEARKQAKLEIDLAEKELANAKRMRQQAQIELKKAQALRQEAIKQINSTLLQITCQNCQQRFHHQERTVNMNTSTVSSTAPHEENSLVFSYMSVITTDGDHNNNLTSNIVLPKYVSNNP 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2989059 2991592 - Conep13aG0036300.1 Cone13ag0343 450730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0343 463 Coils Coil 341 389 - -
Cone13ag0343 463 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cone13ag0343 463 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Cone13ag0343 463 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cone13ag0343 463 SUPERFAMILY beta-beta-alpha zinc fingers 58 84 IPR036236 -
Cone13ag0343 463 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 187 - -
Cone13ag0343 463 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Cone13ag0343 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cone13ag0343 463 MobiDBLite consensus disorder prediction 296 323 - -
Cone13ag0343 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 404 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone13ag0343 463 MobiDBLite consensus disorder prediction 1 27 - -
Cone13ag0343 463 SMART c2h2final6 102 132 IPR013087 -
Cone13ag0343 463 SMART c2h2final6 138 165 IPR013087 -
Cone13ag0343 463 SMART c2h2final6 61 83 IPR013087 -
Cone13ag0343 463 MobiDBLite consensus disorder prediction 1 50 - -
Cone13ag0343 463 MobiDBLite consensus disorder prediction 296 326 - -
Cone13ag0343 463 FunFam protein indeterminate-domain 12-like 40 108 - -
Cone13ag0343 463 Gene3D Classic Zinc Finger 49 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0343 Cone-Chr13:2989059 Cone19ag0310 Cone-Chr19:2386394 2.50E-251 dispersed
Cone13ag0343 Cone-Chr13:2989059 Cone16ag0268 Cone-Chr16:2992420 1.16E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44594 PF09192 Act-Frag_cataly 3.50E-48 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0343 K25871 - csv:101209426 533.487