Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0352 ATGGTGTTAACGACGACTACCTCCGAACTGGCCGAGAATCTTCACTGCACTTTTGCTTCCAGATATGTCCGCGATGTTCTTCCTAAGTTCAGGATGGGAGAGAAATCGATCCCAAAGGAAGCAGCGTACCAAGTGATCCACGATGAGTTGATGCTGGATGGGAATGCCAGGTTGAATCTGGCCTCGTTTGTGACTACCTGGATGGAGCCAGAATGCGATAAGCTCATCATGGACTCAATCAACAAGAATTATGTCGACATGGATGAGTATCCTGTCACCACTGAGCTTCAGAACCGATGTGTGAATATGATAGCTCACCTCTTTAATGCTCCTGTTGGAGATGATGAAGCAGCAGTCGGTGTGGGAACCGTGGGATCATCAGAGGCTATAATGCTGGCTGGACTTGCTTTTAAAAGGAAATGGCAGCACAAGAGAAAAGAAGAGGGAAAACCCTATGACAAACCCAACATAGTTACTGGTGCTAATGTTCAGGTGTGCTGGGAGAAGTTTGCTAGGTACTTCGAGGTCGAGCTAAAGGAAGTGAAGCTGTCCGAGGGATATTATGTGATGGACCCTAAGAAAGCAGTCGAACTAGTAGATGAGAACACTATCTGTGTTGCGGCCATTTTAGGATCAACATTGACAGGAGAGTTTGAAGATGTGAAACTCCTTAATTATCTACTCACTGAGAAGAATAAGGAGACAGGTTGGGACACCCCAATTCATGTTGATGCTGCTAGTGGAGGGTTTATAGCTCCATTCATTTATCCAGACCTCGAATGGGATTTCCGTTTACCATTAGTGAAAAGCATTAATGTCAGTGGTCATAAGTATGGCCTTGTTTATGCTGGTGTTGGCTGGGTTGTATGGAGGAGTAAGAAGGATTTGCCAGACGAGCTCGTATTTCACATTAACTATCTTGGATCTGATCAACCTACTTTTACCCTCAACTTTTCAAAAGGTTCCAGTCAAATAATTGCTCAATATTATCAGTTTATACGTCTTGGCTTTGAGGGTTACAAGAACATCATGGAGAACTGCAGGGAAAATGCAAGAATACTAAAGGACGGACTTGAAAAATTGGGCCGGTTTGAGATCCTCTCCAAAGATATCGGAGTGCCACTTGTAACCTTCTCCCTGAAAGACAGCAGCAAACACACGGTTTTCGAGATAGCGGAGAATCTAAGAAGGTTTGGCTGGATTGTCCCAGCATATACAATGCCGGCTAATGCAGAACACATTGCTGTGTTAAGGGTGGTGATTAGGGAGGACTTTAGCCATGGATTGGCTGAGAGACTTATCTCGGATATTGGAATAGTCCTCAAGGAAATAGATGATTTACCAAGCAGAATCTCTGTCAAGTCTGCTCATGTACTCGCAGCTAGTGGTGAGGAAGAAACACATGTGAAGAAGAAGAGTGTGATTGAGATTCAACGGGAGGTAACTAGTTATTGGAAGAGGTTTGTGGATGGGAAGAAAACAGGGGCCTGCTAG 1494 44.44 MVLTTTTSELAENLHCTFASRYVRDVLPKFRMGEKSIPKEAAYQVIHDELMLDGNARLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPVGDDEAAVGVGTVGSSEAIMLAGLAFKRKWQHKRKEEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPKKAVELVDENTICVAAILGSTLTGEFEDVKLLNYLLTEKNKETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRSKKDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCRENARILKDGLEKLGRFEILSKDIGVPLVTFSLKDSSKHTVFEIAENLRRFGWIVPAYTMPANAEHIAVLRVVIREDFSHGLAERLISDIGIVLKEIDDLPSRISVKSAHVLAASGEEETHVKKKSVIEIQREVTSYWKRFVDGKKTGAC 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3187624 3190800 + Conep13aG0037200.1 Cone13ag0352 450739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0352 497 PANTHER GLUTAMATE DECARBOXYLASE 1 493 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cone13ag0352 497 FunFam Glutamate decarboxylase 361 448 - -
Cone13ag0352 497 FunFam Glutamate decarboxylase 66 360 - -
Cone13ag0352 497 SUPERFAMILY PLP-dependent transferases 13 444 IPR015424 -
Cone13ag0352 497 Gene3D - 1 65 - -
Cone13ag0352 497 CDD DOPA_deC_like 59 437 - -
Cone13ag0352 497 Gene3D - 361 448 - -
Cone13ag0352 497 Pfam Pyridoxal-dependent decarboxylase conserved domain 39 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cone13ag0352 497 Gene3D - 66 360 IPR015421 -
Cone13ag0352 497 NCBIfam glutamate decarboxylase 17 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cone13ag0352 497 FunFam Glutamate decarboxylase 4 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0352 Cone-Chr13:3187624 Cone19ag0368 Cone-Chr19:3118052 0 dispersed
Cone13ag0352 Cone-Chr13:3187624 Cone18ag1245 Cone-Chr18:8815301 1.73E-284 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0352 K01580 - cit:102611084 835.484