Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0363 ATGGCGAGGAAAAGGAGAACTGAAATTCCTGCTGGTGATGAGAGCTCTGATTCTCGAGAAGCCAGTGGGGGTGGTGGTCAAGGTGGTTTACAACCCCTTGCTGGCGGTGCGCCTCCACAACAGGGAGGGAGAGGATACCAAGGTGGAAGAGGTTGGGGTCCCCAAGGGGGTCGTGGAGGTAATGGAGGTGGCCATAGTTTTGGAACTTCACAACAGCAGTACGGAGGTAATCCTGACTATCAGGGAAGGGGAAGGGGAGGGCTACCTCAACAAGGTGGCCGTGGTGGCTATGAAGGTGGCCGTGGCGGCTACGAAGGCGGCAGCCATGAGGGAGGCCGTGGCGGTCGTGGTTATGGAGGCAATGGTGGCGGTCGTGGCCGAGGACCTCCTGGTGGCCAACCTAGACCACAAGTACCCGAGCTGCACCAAGCAACCCCGGTTCCATACCAAGGTGGGGTGAATCATCCTATCTCATCTGAGGCGAGTTCCTCCCGGCAACCTGAACTTGTGCAGGTGGAGCAACAGCTTGAGCAGCTAGCAGTTCAAGAAACTTCTCCTAGCTTGGAAATTCAACCTGTTCCACAATCAAGTAAATCAATGAGATTTCCCCTCCGTCCGGGAAAGGGTAGCTATGGAACAAGATGTCTAGTAAAAGCCAACCACTTCTTTGCTGAATTACCAGACAAAGATCTTCACCAGTATGATGTTACTATCACTCCGGAGATCACCCCTAGAGGTCTGAACCGTGCTGTAATGAAAGAGTTGGTGAAACTCTACAGGGTGTCTCATCTTGGAGGTAGGCTTCCAGTCTATGATGGACGAAAGAGTCTGTATACTGCTGGTCCTCTTCCTTTCCCATCGAAGGATTTCAGAATCACTCTCCCTGATGAAGATGATGGAGCAGGAGGGCATAGGAGGGAACGAGAATTCAAAGTTGTGATCAAATTTGCTGCACGAGCAGATCTCCACCACTTGGGACTCTTTTTACAGGGGAGAGAGGCTGATGCACCTCAAGAAGCACTTCAGGTTCTTGACATTGTGTTACGTGAGCTGCCAACTTCTAAATTGGTTCCGGTGGGCCGATCATTCTACTCCAAGGATCTTGGAAAACGTCAGTCACTCGGTGAGGGGTTGGAAAGCTGGCGTGGATTTTACCAGAGCATTCGCCCTACACAAATGGGGCTGTCACTAAACATCGATATGTCATCCACAGCCTTCATTGAGGCCTTGCCAGTCATAGAGTTTGTAACCCAGCTTCTCAATCGTGATGTTTCAACCAGACCATTGTCTGATTCTGATCGTGTAAAGATAAAGAAAGCACTGCGAGGAGTCAAGGTTGAAGTTACTCATCGTGGGCACATGCGTAGAAAGTATCGGATATCTGGTTTAACATCACAAGCAACGCGCGAGCTTACTTTCCCAGTTGACGAGAGTGGTACAATGAAATCCGTGGTTGAATACTTTTATGAAACATATGGGTATGTGATTCAACATACCCAATGGCCTTGTTTACAAGTGGGAAATCAGCAAAGGCCAAATTACTTACCTATGGAGGTTTGCAAAATTGTTGAGGGTCAAAGGTACTCGAAGAGGCTGAACGAAAGGCAGATAACAGCTTTGTTGAAGGTCACATGCCAGCGTCCTAAAGATAGGGAGAATGACATTGTGCAGACAGTTAAACATAATGATTATGGAAGGGATGAATATGCAAAGGAATTTGGAATCAAAATTAGTGACAGGCTTGCTTCTGTTGAGGCTCGCATTCTTCCTCCACCATGGTTGAAATATCATGACACGGGTAGGGAAAGGGATTGCTTGCCACAAGTTGGACAATGGAATATGATGAATAAGAAAATGGTTAATGGAGGTACAGTTAACAGTTGGATTTGCATCAACTTTTCGCGAACTGTGCAAGACAGTGTTGCATGTGGTTTTTGTAAAGAGCTTGCTCAAATGTGTTACGTATCTGGAATGGCATTTAATCCAGAACCAGTCCTGCCCCCTCTTAGTAGTCATCCTGATCATGTGGAGAAGGCTCTCAAAACTCGGTACCATGATGCAACAACCAGACTCAAGGGGAAGGAACTCGACTTGCTAATTGTTATTTTGCCAGATAATAATGGCTCTCTTTATGGTGATTTAAAACGCATATGTGAGACAGACTTGGGACTTGTTTCTCAGTGCTGTTTGACAAAACATGTGTTCAAAATGAGCAAACAGTATTTTGCTAATGTGGCGTTAAAGATTAATGTCAAAGTTGGTGGAAGGAATACAGTTCTTGTGGATGCATTATCAAGGCGTATACCATTAGTTAGCGACAGACCTACCATTATATTTGGTGCTGATGTGACGCATCCTCACCCAGGCGAGGATTCAAGTCCTTCCATTGCTGCTGTTGTGGCCTCACAAGATTGGCCGGAAGTCACTAAGTATGCTGGTTTGGTTTGCGCTCAAGCCCACAGACAAGAACTTATCCAGGACTTGTTCAAAACATGGCAAGATCCTGTAAGAGGGACTGTATCTGGTGGAATGATCAAGGAATTACTCATATCATTCCGTAGAGCAACTGGGCAGAAGCCAGAACGAATCATCTTTTACAGGGATGGTGTGAGCGAGGGACAATTCTATCAAGTTTTGCTGTATGAGCTTGATGCCATTCGCAGGGCATGTGCATCTTTGGAGCCAAACTATCAGCCTCCAGTCACTTTTGTTGTGGTACAAAAGCGTCATCACACAAGATTGTTTGCCAACAACCATAATGATCGCAATGCAACTGACAGGCGGAGTGGGAATATATTACCTGGTACAGTTGTAGACTCCAAGATCTGTCATCCGACAGAATTTGATTTCTATCTTTGCAGCCATGCTGGAATTCAGGGTACAAGCCGTCCTGCTCATTACCATGTTTTGTGGGATGAAAACAAGTTCACAGCAGATGGGCTTCAGACCCTTACAAACAACCTGTGCTATACATATGCTAGGTGTACACGGTCTGTTTCTATAGTGCCCCCTGCTTATTATGCCCATCTTGCTGCATTCCGGGCTCGTTTCTATATGGAACCTGAGACCTCCGACAGTGGGTCCATGGCAAGTGGTTTTGCAGCTGGACGTGGAGCTGGTGGTCAACGTGGTGGCACACGAGCAGCAGGTGGAAATGCTGCCGTTAGACCCTTGCCTGCTCTGAAAGAGAACGTGAAGAAAGTTATGTTCTACTGTTAG 3219 47.1 MARKRRTEIPAGDESSDSREASGGGGQGGLQPLAGGAPPQQGGRGYQGGRGWGPQGGRGGNGGGHSFGTSQQQYGGNPDYQGRGRGGLPQQGGRGGYEGGRGGYEGGSHEGGRGGRGYGGNGGGRGRGPPGGQPRPQVPELHQATPVPYQGGVNHPISSEASSSRQPELVQVEQQLEQLAVQETSPSLEIQPVPQSSKSMRFPLRPGKGSYGTRCLVKANHFFAELPDKDLHQYDVTITPEITPRGLNRAVMKELVKLYRVSHLGGRLPVYDGRKSLYTAGPLPFPSKDFRITLPDEDDGAGGHRREREFKVVIKFAARADLHHLGLFLQGREADAPQEALQVLDIVLRELPTSKLVPVGRSFYSKDLGKRQSLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEALPVIEFVTQLLNRDVSTRPLSDSDRVKIKKALRGVKVEVTHRGHMRRKYRISGLTSQATRELTFPVDESGTMKSVVEYFYETYGYVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDRENDIVQTVKHNDYGRDEYAKEFGIKISDRLASVEARILPPPWLKYHDTGRERDCLPQVGQWNMMNKKMVNGGTVNSWICINFSRTVQDSVACGFCKELAQMCYVSGMAFNPEPVLPPLSSHPDHVEKALKTRYHDATTRLKGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYFANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGTVSGGMIKELLISFRRATGQKPERIIFYRDGVSEGQFYQVLLYELDAIRRACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDRNATDRRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGFAAGRGAGGQRGGTRAAGGNAAVRPLPALKENVKKVMFYC 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3287540 3295101 + Conep13aG0038300.1 Cone13ag0363 450750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0363 1072 Pfam Argonaute linker 1 domain 358 408 IPR014811 -
Cone13ag0363 1072 MobiDBLite consensus disorder prediction 184 198 - -
Cone13ag0363 1072 Gene3D paz domain 403 528 - -
Cone13ag0363 1072 FunFam Argonaute 10 588 761 - -
Cone13ag0363 1072 SMART PAZ_2_a_3 414 546 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone13ag0363 1072 ProSiteProfiles PAZ domain profile. 411 524 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone13ag0363 1072 Pfam N-terminal domain of argonaute 214 348 IPR032474 -
Cone13ag0363 1072 MobiDBLite consensus disorder prediction 1 15 - -
Cone13ag0363 1072 Pfam PAZ domain 414 540 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone13ag0363 1072 Pfam Mid domain of argonaute 607 682 IPR032473 -
Cone13ag0363 1072 SUPERFAMILY Ribonuclease H-like 684 1020 IPR012337 -
Cone13ag0363 1072 CDD PAZ_argonaute_like 409 523 - -
Cone13ag0363 1072 Pfam Glycine-rich region of argonaut 106 194 IPR024357 -
Cone13ag0363 1072 Gene3D - 767 1072 IPR036397 GO:0003676(InterPro)
Cone13ag0363 1072 FunFam Protein argonaute-2 403 529 - -
Cone13ag0363 1072 Gene3D - 588 761 - -
Cone13ag0363 1072 CDD Piwi_ago-like 568 1019 IPR045246 -
Cone13ag0363 1072 ProSiteProfiles Piwi domain profile. 698 1020 IPR003165 GO:0003676(InterPro)
Cone13ag0363 1072 MobiDBLite consensus disorder prediction 1 169 - -
Cone13ag0363 1072 MobiDBLite consensus disorder prediction 184 204 - -
Cone13ag0363 1072 FunFam protein argonaute 10-like 767 1072 - -
Cone13ag0363 1072 SMART DUF1785_2 357 409 IPR014811 -
Cone13ag0363 1072 Pfam Piwi domain 699 1019 IPR003165 GO:0003676(InterPro)
Cone13ag0363 1072 SUPERFAMILY PAZ domain 216 555 IPR036085 GO:0005515(InterPro)
Cone13ag0363 1072 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 206 1026 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cone13ag0363 1072 MobiDBLite consensus disorder prediction 155 169 - -
Cone13ag0363 1072 Pfam Argonaute linker 2 domain 550 596 IPR032472 -
Cone13ag0363 1072 SMART Piwi_a_2 698 1020 IPR003165 GO:0003676(InterPro)
Cone13ag0363 1072 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0363 Cone-Chr13:3287540 Cone4ag0276 Cone-Chr4:1247320 0 dispersed
Cone2ag0674 Cone-Chr2:32001583 Cone13ag0363 Cone-Chr13:3287540 0 transposed
Cone13ag0363 Cone-Chr13:3287540 Cone19ag0371 Cone-Chr19:3158324 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0363 K11593 - csv:101212130 1628.61