Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0365 ATGCCGCCTCGAAGATATGCATTTGGGAGGGCCGATGAAGCAAGCCACCCTGACACCATGAGAGCAGCCCTAGCTGAGTTCGTTTCCACTTTCATCTTTGTTTTTGCAGGAGAAGGCTCGATCCTGGCACTTGACAAGATTTACAGGGACGCTGGCACATCAGCATCTGAGCAAATAGTAGTCGCCCTTGCACACGCCTTCTCCCTCTTTGCCGCTGTTTCATCCAGTATCAACATATCAGGCGGCCATGTCAATCCTGCTGTTACATTCGGTGCCCTACTTGGTGGCCGGATTTCTCTCCTTCGAACTATCTTCTATTGGATCGCTCAACTATTGGGTGCTGTTGTTGCTTCCCTCTTGCTGAGACTCGTCACTGCTGGCATGAGACCACTTGGGTTTTTCGTATCACCAGGAATCGGGGTTGGTCATGGACTTGTAATGGAGGTTGTGCTAACATTCGGCTTGGTTTACACTGTGTATGCCACCGCTATCGATCCCAAAAGAGGCAGCCTGGGTATTATCGGGCCTCTGGCTATTGGGTTAATTGTGGGGGCCAATATCCTTGTTGGTGGGCCGTTTGAGGGTGCATGCATGAATCCTGCTCGGGCATTTGGGCCTGCCTTGTTGGGATGGAGATGGAGGGACCACTGGATTTATTGGGTCGGCCCACTCTTGGGGGGTGGGCTGGCTGGACTTGTATATGAGTTTATGATCATTCCAATGGAGCCCCCACTTTCTCACCAGCCTCTGGCTCCTGAAGATTACTAG 768 51.82 MPPRRYAFGRADEASHPDTMRAALAEFVSTFIFVFAGEGSILALDKIYRDAGTSASEQIVVALAHAFSLFAAVSSSINISGGHVNPAVTFGALLGGRISLLRTIFYWIAQLLGAVVASLLLRLVTAGMRPLGFFVSPGIGVGHGLVMEVVLTFGLVYTVYATAIDPKRGSLGIIGPLAIGLIVGANILVGGPFEGACMNPARAFGPALLGWRWRDHWIYWVGPLLGGGLAGLVYEFMIIPMEPPLSHQPLAPEDY 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3340961 3342059 - Conep13aG0038500.1 Cone13ag0365 450752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0365 255 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0365 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cone13ag0365 255 FunFam Probable aquaporin TIP1-1 4 251 - -
Cone13ag0365 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0365 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0365 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0365 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0365 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0365 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0365 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0365 255 SUPERFAMILY Aquaporin-like 13 244 IPR023271 -
Cone13ag0365 255 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0365 255 Gene3D Glycerol uptake facilitator protein. 5 243 IPR023271 -
Cone13ag0365 255 PANTHER AQUAPORIN-8 5 242 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0365 Cone-Chr13:3340961 Cone3ag0242 Cone-Chr3:1297684 3.03E-108 dispersed
Cone15ag0870 Cone-Chr15:6663624 Cone13ag0365 Cone-Chr13:3340961 4.99E-68 transposed
Cone13ag0365 Cone-Chr13:3340961 Cone19ag0307 Cone-Chr19:2341700 2.49E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0365 K09873 - mdm:103415378 412.535