Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0376 ATGAAAACCTCAGCTCAAGATGAAGAACACATATTCTATAGCCAATTTCCGAACGTTCAAGTGCCGAAAGACGTCACATTGCCCGAATTCGTGCTTCAAAATGCCGAACTTTACATCAACAAGGTTGCATTCGTAGAAGCAGTGAGTGGAAAAGAAATCACTTATGGTCAAGTGGTTACAGACACAAAGAGATTCGCCAAAGCCTTGAGGTCTCTAGGCCTTAAGAAGGGCCACGTGGTAATTGTTGTACTTCCGAATCAAGCCGAATATGCTGTCGTTGCTCTTGGGATCATGACAGCTGGAGGTGTTTTCTCCGGCGCAAACCCGACTGCCCATTTGTCAGAACTCAAAAAGCAAGTCGAGGCTGCTGATGCTAAGCTCATTGTCACAAATGGATCAAGCTTTGAAAAGGTCAAGGCAATAGGGCTACCAGTTATTGTACTAGATGAAGAACTAGTTGAAGGTGCAATGAATTGGAACGAATTGCTCGAAGCAGCGGACCGGGCTGGGACCAGTGTCCTATGGGAAGATGTTATGCAAACTGATATATGTGCTCTTCCTTTCTCGTCGGGGACAACTGGAATATCAAAGGGTGTAATGCTTACTCACCGAAATATAGTGGCGAATCTATGTTCCACACTTTCCGGAGTACCAGAAGAGGCAGTGGGCCAGGTCACAACATTGGGCCTGATCCCATTCTTTCATATTTATGGGATAACCGGAATATGTTGTGCTACACTTAGAAACAAGGGGAAAGTTGTGGTCATGGGAAGGTTTGAGCTTAGGACCTTCCTAAATGCATTGATCACACAAGAAGTCACATTTGCTCCAATTGTGCCCCCTATTATTTTAAACTTGGTTAAGAATCCAATTGTGGATGAGTTCGATCTCACCCAGCTCAAGCTCCAGGCAGTTATGACTGCGGCTGCACCGCTTGCACCCGAGCTTCTCTCTGCCTTTGAAAGGAAGTTCCCGGGTGTTCATGTTCAAGAGGCATATGGATTGACGGAGCATAGCTGCATAACGCTAAGCTACGGGAACATAGGCAAAGGGGATGGAAATGGAAGGAAAAACACAGTGGGAAAAGTTCTCCCGAATTTGTCAGTAAAATTTATCGATCCAGACACGGGTCGGTCTCTATCTAAGAATACTCCTGGTGAAATCTGTGTTAAAAGCCAGTGTGTAATGCAAGGCTACTATAAAAATGAGGAGGAGACTGCTCGGACCATTGACAAAAATGGCTGGCTTCATACCGGTGATATCGGGTACATAGATGATGATGGGGATGTTTTTATTGTCGATCGAATCAAGGAATTGATCAAGTACAAAGGATTCCAAGTTGCTCCAGCTGAGCTAGAGGCAATCCTTCTTACTCATCCGTCTATCGAAGACGTAGCCGTTGTGCCACTGCCGGACGAGGAGGCGGGGGAAATTCCAGCAGCAAGCGTTGTGATGGCTGCAAATGCAAATGAGAATGAAAAAGATATCATGAACTTTGTGGCCTCAAACGTTGCAAATTACAAAAAAGTCCGATTAGTGCACTTTGTGGAGTCTATCCCAAAATCACCTTCTGGTAAAATAATGAGAAGGCTTATTAAGGAGAAGATGATTCAAAAGATTCAAGCCAAGCCCACTTAA 1638 44.81 MKTSAQDEEHIFYSQFPNVQVPKDVTLPEFVLQNAELYINKVAFVEAVSGKEITYGQVVTDTKRFAKALRSLGLKKGHVVIVVLPNQAEYAVVALGIMTAGGVFSGANPTAHLSELKKQVEAADAKLIVTNGSSFEKVKAIGLPVIVLDEELVEGAMNWNELLEAADRAGTSVLWEDVMQTDICALPFSSGTTGISKGVMLTHRNIVANLCSTLSGVPEEAVGQVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFELRTFLNALITQEVTFAPIVPPIILNLVKNPIVDEFDLTQLKLQAVMTAAAPLAPELLSAFERKFPGVHVQEAYGLTEHSCITLSYGNIGKGDGNGRKNTVGKVLPNLSVKFIDPDTGRSLSKNTPGEICVKSQCVMQGYYKNEEETARTIDKNGWLHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVAPAELEAILLTHPSIEDVAVVPLPDEEAGEIPAASVVMAANANENEKDIMNFVASNVANYKKVRLVHFVESIPKSPSGKIMRRLIKEKMIQKIQAKPT 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3435191 3437581 - Conep13aG0039600.1 Cone13ag0376 450763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0376 545 Gene3D - 9 437 IPR042099 -
Cone13ag0376 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 437 - -
Cone13ag0376 545 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Cone13ag0376 545 SUPERFAMILY Acetyl-CoA synthetase-like 12 539 - -
Cone13ag0376 545 CDD 4CL 21 530 - -
Cone13ag0376 545 Gene3D - 438 541 IPR045851 -
Cone13ag0376 545 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Cone13ag0376 545 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cone13ag0376 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 532 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
Cone13ag0376 545 Pfam AMP-binding enzyme 34 400 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0376 Cone-Chr13:3435191 Cone4ag1085 Cone-Chr4:9393443 9.99E-127 dispersed
Cone19ag0407 Cone-Chr19:3414569 Cone13ag0376 Cone-Chr13:3435191 1.74E-46 transposed
Cone19ag0408 Cone-Chr19:3414832 Cone13ag0376 Cone-Chr13:3435191 1.63E-91 transposed
Cone13ag0376 Cone-Chr13:3435191 Cone19ag0406 Cone-Chr19:3414063 1.54E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0376 K01904 - csv:101220731 860.136