Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0399 ATGGTGCTTTTCATTGTCTTGACACTGCTTTCTCTTCTGGGCACCACTTGCTCTTTCACTTTGGTCAGTGATTTTCATGCATTACTTGGACTAAGAAACGGATTTCAATCCCCTAACCCCGTTTTAAGCACTTGGAATGTTTCGAGTCTGAATTCAGTTTGTTCATGGACTGGGATTCAATGCTATAGGGGACGAGTCATTTCAGTCGACTTAACAGATTTGAGTCTATATGGAAGTGTTTCACCTCAAATTTCAAGACTGGACCGCCTTACCAGCCTCTCTCTTTCAGGAAATAATTTTACGGGCAGCATTGATCAGGTTGTAAATCTGAGCAACCTCCAATTCCTTAACATCTCCCACAATCAGTTCAATGGGGGATTGGACTGGAACTACTCGAGCATGACAAACTTAGAAGTTTTTGATGCCTATGACAACAACTTCACTTCATCGCTTCCTAATGAGATTTCAAGCTTGAGGAAGCTCAAGTACTTGGATCTTGGAGGAAATTATTTCCAAGGCAGAATCCCTAAGAGCTACGGGAGTTTTGAAAAGCTGGAATATCTTTCACTTTTGGGAAACAATTTACAAGGAAAAATCCCGAGTGAGTTAGGAAACCTTACAATATTGAGAGAGATTTACTTGGGCTATCTCAATGCTTTTGAAGGTGGCATTCCAAAAGAGTTGGGAAAGTTGGTCAATTTGGTTCACATGGATATTTCAATGTGTGAATTGGATGGGCTGATTCCACATGAACTAGGGAACTTGAAATCGCTTGACACTCTCTATTTGCACACAAATCTACTTTCCGGAACAATTCCCAAGCAGTTAAGCAACATAACAAGCTTGGTTAACCTTGATCTCTCCAACAATGTGCTTACTGGAGAAATCCCATCTGAGTTTGTCAGTCTCAAACAGCTCAAGCTTTTCAATCTCTTCATGAACAAATTGCATGGTTCTATTCCGGACTATGTTGCAGACTTTCCGAATTTAGAAGCTCTGGCGCTATGGTCAAACAACTTAACCGGCAAGATACCTGAGAATCTCGGCCAAAATGGGAAGCTAAAACTGCTTGATTTGTCCACAAATAAGCTAACCGGTACCATCCCTAGAGACATATGTTCATCAAATCAGCTCCTCACATTGATACTCATGAACAACTTCCTCTTTGGGTCTATTCCCCATGGGTTGGGTACTTGTTTGAGCCTCACAAAAGTGAGGCTAGGACAGAACTACTTGAATGGTAGCATTCCAAATGGCTTCATTTACTTGCCTGAGCTAGGCTTAATAGAGCTGCAAAACAATTACCTCTCTGGAAAATTGTTAGAGAACGGCAATAGCTCACCTAAACCTGTCAAATTAGGCCAGATTAATCTATCCAACAATCTCTTATCCGGATTTTTACCACTTTCACTTTCGGATTTCTCTTCCCTTCAAATCCTTGACATCAGTGAAAACCAGTTCTCAGGTCTAATCCCCCCTTCCATTGGACAACTTAATCAATTACTGAAACTTGATCTTAGCAGGAACTCCTTCTATGGAGAAATCCCACCTGAAACTGGTAACTGTTACCATCTAACATACCTTGACATGAGCCAAAACAACTTCTCTGGCCAAATCCCATCCGAGATTTCCAATGCCCACATCCTCAATTACCTAAACTTGTCAAGAAACCACCTGAACCAAACTATACCGAGATCAATCGGAACCATGAAAAGCCTCACAATTGCCGATTTCTCATTCAATGATTTTTCCGGAAAGCTACCAGAAACAGGGCAGTTCTCCTTCTTTAACGCTTCATCCTTTGCGGGCAACCCTCAACTTTGTGGTTCTCTCCTAAAAATTCCTTGCAACTTCACCGCAATAAATGGAAAACCAGGAAAAAGCCCTGCAAATATGAAACTAATCTTCGCGCTTGGCCTGTTAATATGCTCTCTAGTCTTTGCCGCTGCAGCCATAATCAAGGCCAAAAAGTTCAAAAGAAAAGGCTCAGACACATGGAAAATGACCGCGTTTCAAAATCTGGAATTCACGATCCCTGATATTCTCGAATGCGTGAAAGATGGCAACGTTATAGGACGAGGAGGGGCGGGGATAGTATACCATGGAAAAATGCCCAACGGAGTCGACATCGCAGTAAAGAAGCTTCTAGTTTCAGGATCAAATACCTATGACAGTGGATTCAAGGCCGAAATCAAAACCCTAGGCAACATCCGCCACCGCAACATTGTGCGGCTGCTAGCATTTTGCTCGAACAAGGAGATCAACCTCCTCGTCTTCGAATATATGAGGAACGGAAGCTTGGGGGAGGCATTGCACGGGAAGAAGGGAGCATCGTTGGGATGGAATTTGAGGTGCAAGATCGCCATTGAAGCGGCGAAAGGACTGTGCTACCTTCACCATGATTGCTCGCCATTGATCGTACATCGAGACGTGAAGTCGAACAACATCTTGTTGAATTCGAGCTTCGAAGCTCACGTTGCTGATTTCGGGCTCGCGAAATTCTTGTCGGGCGGGGAAGCGTCGGAGTATATGTCGGCGATTGCAGGTTCTTACGGCTACATCGCTCCTGAGTATGCATATACATTACGAGTGGATGAAAAAAGCGATGTATACAGCTTCGGAGTAGTGTTGCTAGAGCTTTTAACAGGGCGCCGGCCGGTGGGTAGTTTCGGTGAGGGTATAGACATTGTTCAATGGTCAAAACAAACAACAAACATTCGGAAAGAAGACGTGAGTTACATTGTGGATCATAGACTTCAAAGCGTGCCTAAAAATGAAGCAATGCACTTGTTTCTCGTCGCTATGTTGTGTGTGCATGAAAATAGTATGGAGAGACCGACGATGAGAGAAGTTGTTCAGATATTGTCTGAATTTCCACACCATTCGCCTCATTTCCAACAATCACTATCTTCTTCTACTTGTGATCGGGAATCAAACAACAAAGACAAAGACAATGACTACCAGAAGTCTACATAA 2976 43.04 MVLFIVLTLLSLLGTTCSFTLVSDFHALLGLRNGFQSPNPVLSTWNVSSLNSVCSWTGIQCYRGRVISVDLTDLSLYGSVSPQISRLDRLTSLSLSGNNFTGSIDQVVNLSNLQFLNISHNQFNGGLDWNYSSMTNLEVFDAYDNNFTSSLPNEISSLRKLKYLDLGGNYFQGRIPKSYGSFEKLEYLSLLGNNLQGKIPSELGNLTILREIYLGYLNAFEGGIPKELGKLVNLVHMDISMCELDGLIPHELGNLKSLDTLYLHTNLLSGTIPKQLSNITSLVNLDLSNNVLTGEIPSEFVSLKQLKLFNLFMNKLHGSIPDYVADFPNLEALALWSNNLTGKIPENLGQNGKLKLLDLSTNKLTGTIPRDICSSNQLLTLILMNNFLFGSIPHGLGTCLSLTKVRLGQNYLNGSIPNGFIYLPELGLIELQNNYLSGKLLENGNSSPKPVKLGQINLSNNLLSGFLPLSLSDFSSLQILDISENQFSGLIPPSIGQLNQLLKLDLSRNSFYGEIPPETGNCYHLTYLDMSQNNFSGQIPSEISNAHILNYLNLSRNHLNQTIPRSIGTMKSLTIADFSFNDFSGKLPETGQFSFFNASSFAGNPQLCGSLLKIPCNFTAINGKPGKSPANMKLIFALGLLICSLVFAAAAIIKAKKFKRKGSDTWKMTAFQNLEFTIPDILECVKDGNVIGRGGAGIVYHGKMPNGVDIAVKKLLVSGSNTYDSGFKAEIKTLGNIRHRNIVRLLAFCSNKEINLLVFEYMRNGSLGEALHGKKGASLGWNLRCKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSSFEAHVADFGLAKFLSGGEASEYMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGSFGEGIDIVQWSKQTTNIRKEDVSYIVDHRLQSVPKNEAMHLFLVAMLCVHENSMERPTMREVVQILSEFPHHSPHFQQSLSSSTCDRESNNKDKDNDYQKST 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3641599 3645474 - Conep13aG0041900.1 Cone13ag0399 450786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0399 991 SUPERFAMILY Protein kinase-like (PK-like) 675 955 IPR011009 -
Cone13ag0399 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 131 218 - -
Cone13ag0399 991 MobiDBLite consensus disorder prediction 976 991 - -
Cone13ag0399 991 Gene3D Ribonuclease Inhibitor 492 618 IPR032675 -
Cone13ag0399 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 957 IPR050647 -
Cone13ag0399 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 762 972 - -
Cone13ag0399 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 620 - -
Cone13ag0399 991 SUPERFAMILY RNI-like 68 413 - -
Cone13ag0399 991 Gene3D Ribonuclease Inhibitor 214 375 IPR032675 -
Cone13ag0399 991 ProSiteProfiles Protein kinase domain profile. 685 965 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0399 991 Gene3D Phosphorylase Kinase; domain 1 649 761 - -
Cone13ag0399 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0399 991 Gene3D Ribonuclease Inhibitor 23 130 IPR032675 -
Cone13ag0399 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 219 324 - -
Cone13ag0399 991 Pfam Leucine Rich Repeat 160 180 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 281 303 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 353 374 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 184 206 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 89 105 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 329 350 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 233 255 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 Pfam Leucine Rich Repeat 549 569 IPR001611 GO:0005515(InterPro)
Cone13ag0399 991 SUPERFAMILY L domain-like 353 609 - -
Cone13ag0399 991 FunFam Leucine-rich repeat receptor-like kinase 23 129 - -
Cone13ag0399 991 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Cone13ag0399 991 SMART serkin_6 685 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0399 991 Pfam Protein kinase domain 687 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0399 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 761 - -
Cone13ag0399 991 Gene3D Transferase(Phosphotransferase) domain 1 762 981 - -
Cone13ag0399 991 SMART LRR_typ_2 134 158 IPR003591 -
Cone13ag0399 991 SMART LRR_typ_2 498 522 IPR003591 -
Cone13ag0399 991 SMART LRR_typ_2 87 110 IPR003591 -
Cone13ag0399 991 SMART LRR_typ_2 352 375 IPR003591 -
Cone13ag0399 991 SMART LRR_typ_2 255 279 IPR003591 -
Cone13ag0399 991 SMART LRR_typ_2 327 351 IPR003591 -
Cone13ag0399 991 MobiDBLite consensus disorder prediction 963 991 - -
Cone13ag0399 991 Gene3D Ribonuclease Inhibitor 131 213 IPR032675 -
Cone13ag0399 991 Gene3D Ribonuclease Inhibitor 376 491 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0885 Cone-Chr10:4565453 Cone13ag0399 Cone-Chr13:3641599 4.79E-189 dispersed
Cone13ag0399 Cone-Chr13:3641599 Cone6ag1494 Cone-Chr6:11836339 1.56E-158 dispersed
Cone1ag0381 Cone-Chr1:3251741 Cone13ag0399 Cone-Chr13:3641599 1.48E-157 transposed
Cone13ag0399 Cone-Chr13:3641599 Cone3ag0913 Cone-Chr3:4685111 5.45E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82014 PF00249 Myb_DNA-binding 7.80E-07 CL0123 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0399 - - - 0.0