Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0433 ATGGCTTCTGGTGCTCGCTTAGTTGTATCGGATTTTACCATGTCTTTCATGTGGGTTTGGTCGAGTGTTCTGATTAAGCTGTTTGTGGTCAACGTTTGTGGATTTGGTGTTCATGAACCAAGGGGTGAGATTATCAAGGCTTCTCTCTCTATTGCCAACATGTTTTTCTTTGCTTTCTTGGTCAAGATTACTAAAGGCGGTAGTTATAATCCTCTCACCCTCCTGTCTTCTGCTCTTTCTGGCGATTTCAGCCGCTTCCTTTTCACTTTTGGGGCCAGAATCCCTGCTCAGGTAATTGGATCTATAAGTGGGGTGAGACTGATCATAGAGACATTTCCTCAGATAAAACGAGGGCCGAGTTTGAACGTCGATATTCATCAAGGTGCCTTAACAGAAGGGTTGTTGACTTTCGCAATTGTTTTAATCTCACAAGGACTTTCCAGAAAAATCCCTCATCAGGACTCCTTCATGAAGACTTGGATTTCTAGTATCTCTAAATTTACTCTTCATATCCTTGGCTCCGATCTCACTGGTGGTTGTATGAACCCCGCCTCTGTGATGGGATGGGCTTATGCACGTGGGGAACACATAACAAAGGAGCATATACTTGTGTACTGGCTTGCCCCAGTAGAAGGAACTCTACTAGCAGTGTGGACTTTTAGGTTACTGATTCGGCAAACCAAAGAGGACAAACTCATGAGTTTAAAGAGTAAATCAGAATGA 723 43.43 MASGARLVVSDFTMSFMWVWSSVLIKLFVVNVCGFGVHEPRGEIIKASLSIANMFFFAFLVKITKGGSYNPLTLLSSALSGDFSRFLFTFGARIPAQVIGSISGVRLIIETFPQIKRGPSLNVDIHQGALTEGLLTFAIVLISQGLSRKIPHQDSFMKTWISSISKFTLHILGSDLTGGCMNPASVMGWAYARGEHITKEHILVYWLAPVEGTLLAVWTFRLLIRQTKEDKLMSLKSKSE 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3995528 3997415 + Conep13aG0045300.1 Cone13ag0433 450820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0433 240 PRINTS Major intrinsic protein family signature 89 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0433 240 PRINTS Major intrinsic protein family signature 163 185 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0433 240 PRINTS Major intrinsic protein family signature 131 149 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0433 240 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0433 240 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0433 240 Gene3D Glycerol uptake facilitator protein. 2 239 IPR023271 -
Cone13ag0433 240 SUPERFAMILY Aquaporin-like 9 231 IPR023271 -
Cone13ag0433 240 Pfam Major intrinsic protein 6 219 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone13ag0433 240 PANTHER AQUAPORIN SIP2-1-RELATED 3 238 IPR044226 GO:0015267(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0696 Cone-Chr12:6370067 Cone13ag0433 Cone-Chr13:3995528 1.43E-31 dispersed
Cone13ag0433 Cone-Chr13:3995528 Cone8ag0723 Cone-Chr8:7278339 6.65E-37 dispersed
Cone10ag0486 Cone-Chr10:2255023 Cone13ag0433 Cone-Chr13:3995528 3.11E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0433 K09875 - rcu:8289527 348.977