Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone13ag0457 | ATGAACGACCTACTGTCGGAATCCTTTGAGATCCCCCGTGGTCAGACTTCTAGGGGTCGTGACATTGAGCTAGGAACATATGATGCTTCAATGAATACAGAGGACCAGGGCTTAGAGAATTTCTTTAAGAAGGTTCAAGAGATGGAGAAACAGAATGAGAAACTGGATAAGCTACTTAAAAAACTGCAGGATGCGAATGAGGACTCTAAGGCTGTTACAAAAGCTCCTGCAATGAAAGCCATCAAGCAGAGAATGGAAAAAGATGTTGATGAAGTTGGAAGAATTGCACGTTCAATAAAGGCAAAAATTGAAGACCTTGATAGAGAGAATCTTGCAAACAGACAAAAGCCTGGGTGTGGAAAAGGAACTGGTGTAGATAGATCGAGAACAGCAACAACCCTTGCCCTGAAAAAGAAGTTTAGAGACAAGATGGCTGAATTTCAGACTTTACGAGAAACCATCCATCAAGAGTACCGGGAGGTTGTTGAAAGGCGTGTTTTCACAGTGACTGGCGCAAGAGCTGATGAAGAGACAATTGACAAATTGATTGAGACTGGAGATAGTGAGCAAATATTCCAAAAGGCTATCCAGGAACAGGGGCGAGGACAAGTAATGGACACCCTAGCAGAAATTCAAGAGCGTCATAATGCAGTTAGAGAATTGGAGAGAAAGTTGCTTGAATTACAACAGGTGTTCCTGGACATGGCAGTGTTGGTGGATGCTCAAGGGGATATGCTTGACAACATAGAATCACATGTCTCAAGTGCAGTAGATCATGTCCAACAGGGAAATACGGCACTTCAGAAGGCTAAGACACTGCAAAAGAATTCCAGGAAATGGATGTGCATTGCAATCATCATCCTCCTCATAATTGGTGCAGTCATAGTTCTCGGTGTCCTTAAGCCGTGGAAAAGCAGTTAA | 921 | 43.11 | MNDLLSESFEIPRGQTSRGRDIELGTYDASMNTEDQGLENFFKKVQEMEKQNEKLDKLLKKLQDANEDSKAVTKAPAMKAIKQRMEKDVDEVGRIARSIKAKIEDLDRENLANRQKPGCGKGTGVDRSRTATTLALKKKFRDKMAEFQTLRETIHQEYREVVERRVFTVTGARADEETIDKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHNAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVSSAVDHVQQGNTALQKAKTLQKNSRKWMCIAIIILLIIGAVIVLGVLKPWKSS | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 4925873 | 4936438 | - | Conep13aG0047700.1 | Cone13ag0457 | 450844 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone13ag0457 | 306 | Pfam | SNARE domain | 244 | 296 | IPR000727 | - | |
| Cone13ag0457 | 306 | Coils | Coil | 211 | 231 | - | - | |
| Cone13ag0457 | 306 | FunFam | Syntaxin 132 | 33 | 162 | - | - | |
| Cone13ag0457 | 306 | FunFam | Syntaxin 132 | 201 | 301 | - | - | |
| Cone13ag0457 | 306 | SMART | tSNARE_6 | 203 | 270 | IPR000727 | - | |
| Cone13ag0457 | 306 | Coils | Coil | 38 | 75 | - | - | |
| Cone13ag0457 | 306 | CDD | SynN | 38 | 195 | IPR006011 | GO:0016020(InterPro) | |
| Cone13ag0457 | 306 | PANTHER | SYNTAXIN | 40 | 288 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
| Cone13ag0457 | 306 | SMART | SynN_4 | 33 | 159 | IPR006011 | GO:0016020(InterPro) | |
| Cone13ag0457 | 306 | Gene3D | - | 198 | 300 | - | - | |
| Cone13ag0457 | 306 | CDD | SNARE_syntaxin1-like | 207 | 269 | - | - | |
| Cone13ag0457 | 306 | SUPERFAMILY | t-snare proteins | 37 | 263 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
| Cone13ag0457 | 306 | ProSitePatterns | Syntaxin / epimorphin family signature. | 214 | 253 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
| Cone13ag0457 | 306 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 208 | 270 | IPR000727 | - | |
| Cone13ag0457 | 306 | Gene3D | - | 33 | 162 | - | - | |
| Cone13ag0457 | 306 | Pfam | Syntaxin | 40 | 243 | IPR006011 | GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0529 | Cone-Chr10:2441741 | Cone13ag0457 | Cone-Chr13:4925873 | 1.93E-156 | dispersed | |
| Cone13ag0457 | Cone-Chr13:4925873 | Cone3ag1346 | Cone-Chr3:32432230 | 7.42E-110 | dispersed | |
| Cone13ag0457 | Cone-Chr13:4925873 | Cone3ag0557 | Cone-Chr3:2748964 | 5.45E-155 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone13ag0457 | K08486 | - | mdm:103453889 | 462.996 |