Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0468 ATGGCTACGTACTTTCATGGCAACACGGAAATCCAAGCACCCGATGGCTTGCAAACCCTTCTGCTCATGAACCCAACAGCCTATGTCCAATACTCCGACACCCCGCCACCACCGCCGCCGCCGACATCAGCCAACCACCTCGTATTCCTCAACTCCGCCGCCAACTCTCTCTCCACCCACAACCACCTCCCCCCTCACCACGCGCCAATATCATCCCACACACAACAATTCGTCGGCATCCCACTGCCCACAAGCGCTGCCGCTAACCACCATGACTTACCAAACATAACCTCCATGCATGGTTTCATCAATCCAGGTCACCTCCAGTACAACCTTTGGAACCCAAACATAAATAATGACCCATCTACGGTGGCGCGTGACTCCCCACGCGCCCAGCAAGGTTTGTCCTTGAGCCTCTCCTCCTCTCAACACCCTCCTCCTCCTCCAGGTTACGGCTCGAACCACGACGAACGGAAAGGCCCATTCACACAAAATGCCCAACAAATGATTTCAAACGATCACGACATGCGGAATATTTCGGGCGGGTCTTCCTCTTCGGCATCAGGTATAACCAACGGTGTTTCGGGTTTACAGGGCGTGCTGTTGAGTTCAAAGTACTTGAAAGCGGCTCAAGACCTTCTTGACGAGGTTGTCAATGTTGGAAATGATCACAATGGTATCAAGAAGGGTAGCAATATCGGACAACAGAGTAAGGTGGCCGGAGAGGGGTCTGGTCAGGTGGCTGGAGATGGGTCTGCCGGCGTGCGTGCAGATGGTAAGAGCAGCTCCGAGCTTTCCACCGCTGAGCGCCAAGAAATTCAAATGAAGAAGGCAAAGCTTATTAGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAATACCATCACCAAATGCAGATCATAATATCATCATTCGAGCAAGCGGCCGGGATTGGTTCTGCAAAAACATACACGTCTCTTGCGCTTGAGACGATCTCAAAGCAATTCAGGTGTTTGAAAGAGACTATTACCAGCCAAATCAAAAGTGCAAACAAAACCTTAGGAGAAGAAGATAATGGTCTTAGTAATGGTGGAGGAAAGATTGTAGGGTCGCGATTGAAATATGTCGATCATCAGCTTCGTCAGCAAAGAGCTCTTCACCAGTTGGGAATGATCCAGCATAATGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTCCTTCACCCATATCCAAAAGATTCAGACAAGATCATGCTTGCAAAACAAACAGGGCTTACTAGAAGCCAGGTTTCAAATTGGTTTATAAATGCAAGAGTTAGGCTATGGAAACCAATGGTGGAAGAAATGTACTTGGAAGAAATCAAGGAACAAGAACAGAGTAATACTAATAATGGTGCAGTAGTGAAGAGCAACAATAATAACATCAACAATGAATGTTCTCCTTCCAAATCCATCACTTTACAAGGCAAAAGTAGTACTCCTCCAACTCATGATCATCAAAACCAACCATCAGGCTTCAACTCCAAGAAAGAGAATCCCCCCGAAATCTTAACTTCGCCGGTAAATCTTCGGAACCAATCCAGTTTTTCTCTCATTGGGTCTTCGGAACTAGAAGGGATCACTCAATTGAGCCCGAAGAAGCAAAGAACATCGGATCATGTGGAAGCTAGTAATGAGCATAACATGTCAATGAAGTTCAATGAAGATCATAGACAAAGTAGTAGAGATGGGTATCCCTTTATGGGAGGCCAAACCAACTTTATTGGAGGTTTTGGGCAATACCCAATTGGGGAAATAGACACTAGGTTCGATGGAGATGATCAATTCACACCCAGGTTTACGGGCAATAACGGCGTTTCCCTCACTCTCGGACTTCCTCACTGTGAAAACCTGTCGCTATCTGGGGCCCACCAGGGCTTTCTCCATAACCAAAACATTAGGATTAATGGAACTCGAAGAGTAGTCGACCACATTGGGGAACAAGACGAGTTTAGTGCTATGAATGGTACTAATGGATCATCTGTGTCCCATTCTTCTACTGCATTTGAAAACATCAATATTCAGAACCGAAAGCGATTCGCCGCCCAATTGTTGCACGACTTTGTGGCTTGA 2130 46.95 MATYFHGNTEIQAPDGLQTLLLMNPTAYVQYSDTPPPPPPPTSANHLVFLNSAANSLSTHNHLPPHHAPISSHTQQFVGIPLPTSAAANHHDLPNITSMHGFINPGHLQYNLWNPNINNDPSTVARDSPRAQQGLSLSLSSSQHPPPPPGYGSNHDERKGPFTQNAQQMISNDHDMRNISGGSSSSASGITNGVSGLQGVLLSSKYLKAAQDLLDEVVNVGNDHNGIKKGSNIGQQSKVAGEGSGQVAGDGSAGVRADGKSSSELSTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIIISSFEQAAGIGSAKTYTSLALETISKQFRCLKETITSQIKSANKTLGEEDNGLSNGGGKIVGSRLKYVDHQLRQQRALHQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQSNTNNGAVVKSNNNNINNECSPSKSITLQGKSSTPPTHDHQNQPSGFNSKKENPPEILTSPVNLRNQSSFSLIGSSELEGITQLSPKKQRTSDHVEASNEHNMSMKFNEDHRQSSRDGYPFMGGQTNFIGGFGQYPIGEIDTRFDGDDQFTPRFTGNNGVSLTLGLPHCENLSLSGAHQGFLHNQNIRINGTRRVVDHIGEQDEFSAMNGTNGSSVSHSSTAFENINIQNRKRFAAQLLHDFVA 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5121282 5125744 + Conep13aG0048900.1 Cone13ag0468 450855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0468 709 Pfam Homeobox KN domain 407 446 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone13ag0468 709 FunFam BEL1-like homeodomain protein 9 393 455 - -
Cone13ag0468 709 Gene3D - 386 464 - -
Cone13ag0468 709 SMART HOX_1 390 454 IPR001356 GO:0003677(InterPro)
Cone13ag0468 709 MobiDBLite consensus disorder prediction 225 242 - -
Cone13ag0468 709 Coils Coil 270 290 - -
Cone13ag0468 709 SMART prehox3 195 338 IPR006563 -
Cone13ag0468 709 MobiDBLite consensus disorder prediction 224 269 - -
Cone13ag0468 709 MobiDBLite consensus disorder prediction 119 161 - -
Cone13ag0468 709 Pfam Associated with HOX 200 337 IPR006563 -
Cone13ag0468 709 MobiDBLite consensus disorder prediction 462 529 - -
Cone13ag0468 709 MobiDBLite consensus disorder prediction 119 141 - -
Cone13ag0468 709 ProSiteProfiles 'Homeobox' domain profile. 387 450 IPR001356 GO:0003677(InterPro)
Cone13ag0468 709 SUPERFAMILY Homeodomain-like 391 456 IPR009057 -
Cone13ag0468 709 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 143 488 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone13ag0468 709 CDD homeodomain 390 451 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0468 Cone-Chr13:5121282 Cone8ag1218 Cone-Chr8:10314758 3.94E-87 dispersed
Cone10ag0125 Cone-Chr10:633452 Cone13ag0468 Cone-Chr13:5121282 1.38E-196 wgd
Cone13ag0468 Cone-Chr13:5121282 Cone19ag0426 Cone-Chr19:3526526 0 wgd
Cone13ag0468 Cone-Chr13:5121282 Cone3ag0138 Cone-Chr3:763964 2.54E-216 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44604 PF00096 zf-C2H2 0.0044 CL0361 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0468 - - - 0.0