Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0475 ATGAACGACTTATTTTCCTCCGGCTCTTTCACTCGCGACAGGTACTCGATCGAGATGACGAACACGGAGTCTCCGACGGCCGTCAACCTCGACAAGTTCTTCGGGGATGTGGAGTCGGTCAAGGACGAGTTGAAGGAGCTGGAGCGGCTCTATCTCAGCCTCCACAATTCGCATGAGCAGAGCAAGACGCTACACAATGCTAAGGCTGTTAAGGATCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTTTAAAGAAGGCGAAGCTGGTCAAGGTCCGATTGGAAGCTCTTGATCGCTCTAATGCTGCGAATCGGAGCTTACCTGGTTGTGGACCTGGCTCTTCGTCGGACCGGACTAGGACTTCTGTAGTCAACGGGCTGAGGAAGAAGCTCAAGGAATCTATGGACAGCTTCAATATTCTCAGGCAGCAGATTTCGGCAGAGTACAGAGAGACCGTTCAGCGCCGTGTTTTCACCGTCACCGGTGAAAATCCCGATGAGAAGACAATCGATCTCATGATCTCTACAGGAGAAAGTGAGACATTCTTGCAAAAGGCGATCCAAGAGCAAGGCAGAGGCAGAGTTTTGGACACCATAAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGATGGAAAAAAACCTACAGGACTTGCACCAAGTATTCTTGGACATGGCAGTTTTGGTGCAGGCTCAAGGCGAGCAACTAGACGACATAGAGAACCAGGTGTTGAGAGCCCATTCGTTTGTCAACAAAGGGACCCATCAGTTGCAGGAGGCTAGGGTACACCAGAAAAGTACCCGGAAATGGACTTGTTACGCCATCATTCTACTGCTGGTCATCATCCTCATAGTGATTCTTAGCTTGAAGCCATGGAACTGGTAA 891 49.49 MNDLFSSGSFTRDRYSIEMTNTESPTAVNLDKFFGDVESVKDELKELERLYLSLHNSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLVKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKESMDSFNILRQQISAEYRETVQRRVFTVTGENPDEKTIDLMISTGESETFLQKAIQEQGRGRVLDTINEIQERHDAVKEMEKNLQDLHQVFLDMAVLVQAQGEQLDDIENQVLRAHSFVNKGTHQLQEARVHQKSTRKWTCYAIILLLVIILIVILSLKPWNW 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5185404 5187362 + Conep13aG0049600.1 Cone13ag0475 450862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0475 296 MobiDBLite consensus disorder prediction 108 122 - -
Cone13ag0475 296 Gene3D - 28 160 - -
Cone13ag0475 296 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 27 157 - -
Cone13ag0475 296 ProSitePatterns Syntaxin / epimorphin family signature. 206 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone13ag0475 296 SMART tSNARE_6 195 262 IPR000727 -
Cone13ag0475 296 SMART SynN_4 25 151 IPR006011 GO:0016020(InterPro)
Cone13ag0475 296 FunFam Syntaxin 132 193 292 - -
Cone13ag0475 296 PANTHER SYNTAXIN 32 282 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone13ag0475 296 SUPERFAMILY t-snare proteins 29 255 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone13ag0475 296 Coils Coil 30 57 - -
Cone13ag0475 296 CDD SynN 30 187 IPR006011 GO:0016020(InterPro)
Cone13ag0475 296 Gene3D - 196 292 - -
Cone13ag0475 296 Pfam SNARE domain 236 288 IPR000727 -
Cone13ag0475 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Cone13ag0475 296 MobiDBLite consensus disorder prediction 103 122 - -
Cone13ag0475 296 CDD SNARE_syntaxin1-like 199 261 - -
Cone13ag0475 296 Coils Coil 200 220 - -
Cone13ag0475 296 Pfam Syntaxin 32 235 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0475 Cone-Chr13:5185404 Cone1ag0131 Cone-Chr1:738960 2.48E-107 dispersed
Cone10ag0529 Cone-Chr10:2441741 Cone13ag0475 Cone-Chr13:5185404 3.44E-75 wgd
Cone13ag0475 Cone-Chr13:5185404 Cone19ag0431 Cone-Chr19:3567171 2.02E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0475 K08486 - csv:101208931 457.603