Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0480 ATGCACAACTCCACTAGTCCTAATGCAGACAACCATGGCTTATTAGGCTCAAACGACATAGGCGGTTTCGGTTACGGCGTCGGAGTTTCTGTCGGAATTCTCATCCTCATAACCACCATTTTACTAGCTTCTTATTTCTGCACCCGAGCTGGATCGTCTACATCGGCACCACCACAAAGCACCACGAACCGAGCAACCGCTCATGATCAACCAGTAGCGGACCACCACATGGTGGTGGTTGATATAGGACTTGATGACGCCACCATCTCAAGCTATCCGGAGTTTCTATTCTCTGAGGCTGATAATTACAAGCATCTTACTGCTAATGAAAATTGTTGTTCTATATGTTTAGGTGATTACAAGAACAGTGATACGGTTCGTGTTTTACCTGAGTGTGGTCATATGTTTCATGTCAGATGTATCGACCCTTGGTTGAAGTTGAATCCGACATGTCCCCTCTGCAGAACTTCTCCTATTCCGACACCACTTTCCACTCCTTTAGCTGAAGTTGTTCCCTTGGCAAGTAGAAGAGATTGA 537 45.62 MHNSTSPNADNHGLLGSNDIGGFGYGVGVSVGILILITTILLASYFCTRAGSSTSAPPQSTTNRATAHDQPVADHHMVVVDIGLDDATISSYPEFLFSEADNYKHLTANENCCSICLGDYKNSDTVRVLPECGHMFHVRCIDPWLKLNPTCPLCRTSPIPTPLSTPLAEVVPLASRRD 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5226450 5226986 + Conep13aG0050100.1 Cone13ag0480 450867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0480 178 SMART ring_2 113 154 IPR001841 -
Cone13ag0480 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
Cone13ag0480 178 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 173 IPR045899 -
Cone13ag0480 178 CDD RING-H2_EL5-like 112 155 - -
Cone13ag0480 178 SUPERFAMILY RING/U-box 91 160 - -
Cone13ag0480 178 Pfam Ring finger domain 112 155 IPR001841 -
Cone13ag0480 178 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0451 Cone-Chr11:2267107 Cone13ag0480 Cone-Chr13:5226450 4.65E-37 dispersed
Cone11ag0974 Cone-Chr11:7870001 Cone13ag0480 Cone-Chr13:5226450 4.20E-33 dispersed
Cone11ag0975 Cone-Chr11:7873438 Cone13ag0480 Cone-Chr13:5226450 5.70E-22 dispersed
Cone13ag0480 Cone-Chr13:5226450 Cone18ag1055 Cone-Chr18:7766454 1.79E-41 dispersed
Cone5ag0409 Cone-Chr5:1743634 Cone13ag0480 Cone-Chr13:5226450 2.47E-30 transposed
Cone13ag0480 Cone-Chr13:5226450 Cone19ag0435 Cone-Chr19:3602114 1.50E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0480 - - - 0.0