Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0504 ATGGCTTCTCGATTCTGGACCCAGGGTGGTAGTGATACTGAGGATGAGGAAAGTGAGTATGATGAGGAAATTGAGAATGGAGAACAAGATGATACCACAGCCACGGCCCAAGCTGCTGGAAGTAGATACCTTCTTGGAATTGATGCTGATAGTGATGATTCTGATGGCCAAAGGCGTGTTGTTAGATCAGCCAAAGACAAGCGCTTTGAGGAGATGTCTGCAACTGTTGACCAGATGAAAAATGCAATGAAGATTAATGATTGGGTCAGCTTGCAAGAGAGCTTTGATAAGATGAATAAGCAACTTGAGAAAGTCATGCGTGTGACCGAGTCTGAAAAGGTCCCTACTCTATATATCAAAGCACTTGTGATGTTGGAGGACTTCTTAACCCAGGCCTTGGCAAATAAGGAGGCAAAGAAGAAGATGAGTAGTAGTAATGCCAAGGCCTTGAATTCGATGAAACAGAAGCTTAAGAAGAACAATAAACAATATGAAGAGGCAATTAACAGGTTCCGGGAGAATCCAGAGAGTGAGGAGGAAAAGGATGAGGAGGAAGAGTCAGAGGAGGAAGAAGAGTCCGGTTCAGAGATTGAGGAGGACCCTTCCAAAATTGCAATGTCTGAGGATGAGGGAGAAGAAGAGGATGATCAAGATGATCGGGCTGGGGGTTGGGAGAAAATGATGAGCAAAAAAGATAAACTCATGGATAAGCAGTTTATGAAGGACCCAAGTGAGATCACATGGGATACTGTTAACAAGAAATTTAAAGAGGTTGTGGCTGCTCGAGGTAGGAAGGGAACAGGAAGGTTTGAGCAGGTTGAGCAGCTTACCTTCTTGACAAAAGTTGCCAAGACCCCTGCACAGAAGCTTGAGATCCTTTTTAGTGTCATTTCTTCTCAGTTTGATGTTAACCCAGGTCTTACTGGACACATGCCTATAAATGTGTGGAAAAAGTGTGTGCAAAACATGCTTGTGGTACTTGACATTCTTGTGCAGCATTCCAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAATGAAAGCCAAAAAGGAGCTGACTATGATGGCAAAATTCATGTTTGGGGAAACCTGGTTGCTTTCTTGGAAAGAATAGATACAGAGTTTTTCAAGAGCTTGCAATGCATAGATCCACACACTCGTGAATATGTTGAAAGACTTAGAGATGAGCCAATGCTTTCAGTTCTTGCCCAAAATATCCAAGAATATTTTGAACAGGTTGGGGATTTCAAAGTGGCTTCCAAGGTCGCCTTGAGGCGGGTTGAACTTATCTACTACAAACCACAGGAGGTTTATGATGCAATGAGAAAGTTGGCTGAACAGACCGAAGATAGAGATAATGGAGAATCAGGGGAGGAGATTAAAGTGGTCGAGGAAAGTAGGGGTCCTTCTGCTTTTATTGTCATTCCTGAGATTGTGCCTCGAAAACCCACCTTCCCAGAGAGCAGTAGAGCCTTGATGGATATTCTGGTGACTCTCATATACGGGCATGGAGATGAGAGAACTAAGGCCCGAGCAATGCTTTGTGATATTTACCACCACGCCCTATTGGATGAGTTTTCTACTTCTCGTGATTTGCTGCTGATGAGCCACTTGCAAGACAGTATTCAACATATGGACATTTCAACCCAGATTCTATTCAACAGGGCTATGGCTCAGCTTGGTCTATGTGCATTCCGTCTTGGACTGGTAAATGAAGGACATGGCTGCCTTTCTGAATTGTATTCAGGCGGACGAATAAAGGAATTACTTGCACAAGGTGTCTCACAGAGCCGTTATCATGAGAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGACGGCAAATGCCATACCATATGCACATAAATCTTGAGCTTCTTGAGGCTGTTCACTTGATCTGTGCTATGTTGCTTGAAGTTCCCAACGTGGCAGCTAACATCCATGATGCGAGGCGAAAGGTCATCAGCAAGACATTTAGGCGATTGCTCGAGGTGAGTGAGAGGCAAACGTACACAGGCCCACCCGAAAGCGTCCGGGACCACATAATGGCTGCCACCCGGGCACTCAACAAAGGAGATTTCCAAAAGGCTTATGATGTCATCATATCCCTTGATGTATGGAAGCTCCTTAGAAACCGTGATCACGTCCTTGAGATGCTAAAGGGTAAGATCAAGGAAGAGGCTTTGAGGACCTACCTGTTTACCTACTCTTCATCTTACAAGTCTCTCAGCTTGGACCAGCTCACCAAACTGTTTGACCTCGTTGAGACTCAGATCCAAAGCATTGTAAGCAAGATGATGATCAATGAAGAGCTCCATGCGAGCTGGGATCAGCCGAGCAGGTGCATTGTTTTTCATGATGTTGAGTACACTAGATTGCAGGCTCTGGCATTCCAGTTGACCGAGAAGTTGACTGTTCTAGCTGAGAGTAATGAAAGAGCCGTAGAGGCAAGGTTAGGTGGGGGAGGACTGGATCTGCCTATGAGGCGAAGAGACAACAACCAAGACTACATGGGAACAGGTGCCCCAAATAGGTGGCAAGACAACTTGTCTTTTGCTCAAGGAGGAAGGCAGGGTGGTGGAAGTAGAGGGAGATTATCAGGGTTGGGCCAAGGTTTAGGAGGTGGTGGATATTCAAGGGACCGAACAAGCCAGTCTAGAGGTGGCGGATCGGGTTACCAGAGTAACCGAAATCAGACAGGTTTGTCTGGAAGGGGGTCCCAAATGGACGGGTCTGGTCGGATGGTCAGTCTCAATAGAGGGGTTCGATCATAA 2775 45.59 MASRFWTQGGSDTEDEESEYDEEIENGEQDDTTATAQAAGSRYLLGIDADSDDSDGQRRVVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKMNKQLEKVMRVTESEKVPTLYIKALVMLEDFLTQALANKEAKKKMSSSNAKALNSMKQKLKKNNKQYEEAINRFRENPESEEEKDEEEESEEEEESGSEIEEDPSKIAMSEDEGEEEDDQDDRAGGWEKMMSKKDKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISSQFDVNPGLTGHMPINVWKKCVQNMLVVLDILVQHSNIVVDDMVEPDENESQKGADYDGKIHVWGNLVAFLERIDTEFFKSLQCIDPHTREYVERLRDEPMLSVLAQNIQEYFEQVGDFKVASKVALRRVELIYYKPQEVYDAMRKLAEQTEDRDNGESGEEIKVVEESRGPSAFIVIPEIVPRKPTFPESSRALMDILVTLIYGHGDERTKARAMLCDIYHHALLDEFSTSRDLLLMSHLQDSIQHMDISTQILFNRAMAQLGLCAFRLGLVNEGHGCLSELYSGGRIKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNVAANIHDARRKVISKTFRRLLEVSERQTYTGPPESVRDHIMAATRALNKGDFQKAYDVIISLDVWKLLRNRDHVLEMLKGKIKEEALRTYLFTYSSSYKSLSLDQLTKLFDLVETQIQSIVSKMMINEELHASWDQPSRCIVFHDVEYTRLQALAFQLTEKLTVLAESNERAVEARLGGGGLDLPMRRRDNNQDYMGTGAPNRWQDNLSFAQGGRQGGGSRGRLSGLGQGLGGGGYSRDRTSQSRGGGSGYQSNRNQTGLSGRGSQMDGSGRMVSLNRGVRS 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5417701 5421564 + Conep13aG0052700.1 Cone13ag0504 450891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0504 924 MobiDBLite consensus disorder prediction 140 223 - -
Cone13ag0504 924 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 719 807 IPR000717 -
Cone13ag0504 924 MobiDBLite consensus disorder prediction 12 29 - -
Cone13ag0504 924 MobiDBLite consensus disorder prediction 837 856 - -
Cone13ag0504 924 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 50 650 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cone13ag0504 924 MobiDBLite consensus disorder prediction 205 219 - -
Cone13ag0504 924 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 864 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cone13ag0504 924 MobiDBLite consensus disorder prediction 820 924 - -
Cone13ag0504 924 MobiDBLite consensus disorder prediction 878 914 - -
Cone13ag0504 924 MobiDBLite consensus disorder prediction 158 177 - -
Cone13ag0504 924 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 892 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)|GO:0031369(PANTHER)
Cone13ag0504 924 MobiDBLite consensus disorder prediction 178 197 - -
Cone13ag0504 924 Pfam PCI domain 715 787 IPR000717 -
Cone13ag0504 924 SUPERFAMILY Winged helix DNA-binding domain 714 789 IPR036390 -
Cone13ag0504 924 ProSiteProfiles PCI domain profile. 618 790 IPR000717 -
Cone13ag0504 924 Coils Coil 147 174 - -
Cone13ag0504 924 MobiDBLite consensus disorder prediction 140 157 - -
Cone13ag0504 924 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0504 Cone-Chr13:5417701 Cone19ag0456 Cone-Chr19:3770923 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0504 K03252 - vvi:100252123 1367.83