Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0520 ATGCCTCCCAGAGAAAATTCTTTCAAACAAGTTACTGACTCAAACCCGTCTGTTCCAATCCATGACATGACAAGAACAAAACCCGAAACCAATTCCACTCTCACGTCAACCACCATTACAGCTACTTCAAGCCACGAGAACAGAATCTTTTCGACCAAAGCAAGCGTCCACAAGCTGCTCAAATGCCCCATTTGCACAACGTTAATGTACCCTCCAATCCACCAGTGTCCAAACGGTCACACATTATGTTCAAACTGCAAGACCCAACTCCGAAACACTTGCCCAACTTGCCATTCCAATCTCGGTCACATAAGATGCTTGGCTTTGGAGAAAATTGCCGTGTCATTACAACTCCCATGCAGATACAAAACCCACGGCTGCCATGTTACTTCCCCGTACTACACAAACCCTATTCACGAGCTAAAATGTCGATTCCGTCCCTACAACTGCCCTTATGCCGGATCCAACTGCTCTATCACAGGCGATATCCCTACCTTAGTACAACATCTCAAGGAAGATCACAAGGTTGACATGCATTGCGGTTCTTCTTTCAACCACTACTACGTTCAATCATTTCCGTTTGAAGTTGAAAATGCTGTTTGGACGTTGACTGTCTTCAACTGTTTCGGACAGCAGTTTTGCTTGCACTTTGAGGCTTTTCGGTTGGGCTCTGCCCCTGTTTACATGGCTTTTTTACGGTTCATGGGAGACAACGATGAGGCAAAGAAATTCGGTTACAGTTTAGAAGTTGGTGGCAACGGTCGTAAATTGATATGGCATGGAGTTCCGAGGAGTATCCGTGATAGTCATAGGAAAGTCCGCGACAGTCGAGATGGTCTTATCTTCCATAAGAATCTGGCTCTTTATTTTTCGGGTGGGGATCAGAAAGAGCTAACGTTACCTGTTACTGGGCGAATATGGAAAGAAAAACGGATATAA 939 45.05 MPPRENSFKQVTDSNPSVPIHDMTRTKPETNSTLTSTTITATSSHENRIFSTKASVHKLLKCPICTTLMYPPIHQCPNGHTLCSNCKTQLRNTCPTCHSNLGHIRCLALEKIAVSLQLPCRYKTHGCHVTSPYYTNPIHELKCRFRPYNCPYAGSNCSITGDIPTLVQHLKEDHKVDMHCGSSFNHYYVQSFPFEVENAVWTLTVFNCFGQQFCLHFEAFRLGSAPVYMAFLRFMGDNDEAKKFGYSLEVGGNGRKLIWHGVPRSIRDSHRKVRDSRDGLIFHKNLALYFSGGDQKELTLPVTGRIWKEKRI 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5506266 5508458 - Conep13aG0054300.1 Cone13ag0520 450907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0520 312 SUPERFAMILY RING/U-box 48 101 - -
Cone13ag0520 312 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 31 304 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone13ag0520 312 Pfam Sina, TRAF-like domain 206 303 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone13ag0520 312 CDD RING-HC_SIAHs 60 98 - -
Cone13ag0520 312 MobiDBLite consensus disorder prediction 1 33 - -
Cone13ag0520 312 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270(InterPro)
Cone13ag0520 312 MobiDBLite consensus disorder prediction 7 33 - -
Cone13ag0520 312 FunFam E3 ubiquitin-protein ligase SINAT3 112 170 - -
Cone13ag0520 312 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 62 97 IPR049548 -
Cone13ag0520 312 SUPERFAMILY TRAF domain-like 115 307 - -
Cone13ag0520 312 FunFam E3 ubiquitin-protein ligase SINAT5-like 171 303 - -
Cone13ag0520 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 114 IPR013083 -
Cone13ag0520 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 170 IPR013083 -
Cone13ag0520 312 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 186 303 IPR008974 GO:0005515(InterPro)
Cone13ag0520 312 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Cone13ag0520 312 Pfam Sina, zinc finger 111 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0520 Cone-Chr13:5506266 Cone1ag0982 Cone-Chr1:54923415 8.31E-145 dispersed
Cone1ag0412 Cone-Chr1:3596196 Cone13ag0520 Cone-Chr13:5506266 9.27E-138 wgd
Cone13ag0520 Cone-Chr13:5506266 Cone19ag0472 Cone-Chr19:3865754 3.98E-131 wgd
Cone13ag0520 Cone-Chr13:5506266 Cone3ag0097 Cone-Chr3:554710 9.98E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0520 K04506 - rcu:8260973 441.425