Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0523 ATGGAGTTAGCTTTAAGCCTCGGAGATGGACCTAAGCCGTTCCAGTTTCTCGACAAGAACCACAAGACGATCAAGATGGCGGAAAATAAAAGCAACAGTAAGGATGTTGGAATGTTTTGCATGGGTTTGGGTACTGGTTTCGGATCTTTAGACTCGTCCGCTGACAAACGGGAGACCCGTCAATGTTCTGACGACGACGATGATTTCGATGATGACGACGACGACCGAGATCCACCAGTTCAGCAGCTCAATCTCTTACCTTTAGCTCCGGTTCATCGTACCTCGTCTTCTATTAATTCTCACCTTCCTTTTCCGTGGCTGGCAGATAACTTGATGACGGAACGGGGTTCGAGTGAGGGACAAGGGAGGGGGTTAGATGTGAACCGGTTGCCGGGAGTGGGGGTGGAGGCTGGGGAGGATGATCAGGGTACTGAGGATAAAGGAGCCGACATGTCGTCACCTAACAGCGCTGTGTCGTCGTTCCAGATGGATATTTTTGTTGTCGGAAATGGAGGTGGTGTCGGAGGAGGAGGAGGAAGAAACAAGAGAGACATGGATCAGTTTGAGAGTGAGAGAGCAAGTTCCAGAGCGAGTGATGATGAAGAAAACGGGTCGACTCGGAAGAAACTCAGACTGTCTAAAGAACAGTCTGCTTTTCTTGAAGAGAGCTTCAAAGAACACAGCACTCTCAATCCTAAGCAGAAACTTGCACTGGCAAAGCAGTTGAATCTTCGTCCTCGCCAAGTAGAAGTATGGTTTCAAAACCGAAGAGCAAGGACAAAGTTGAAGCAGACAGAGGTAGATTGTGAGTATTTAAAGAGATGCTGTGAGACACTGACAGAAGAGAATCGGAGGTTACAAAAAGAACTACAAGAGTTAAGAGCTTTGAAAACTTCTCAGCCTTTTTACATGCAACTTCCTGCCACTACTCTTACCATGTGCCCCTCTTGTGAGCGAGTCGCCACCACCACCACCACTGCTGCCACCGCCACCGCCACAACCACTGCTTCTGCCGCAGCTGCCACCAAACATACCACGTGCCAGCTTGGTAAACCTATAATATTCCCATATTCTTCTTCTCAAACTCACCAACCTGCGTCATGA 1104 48.55 MELALSLGDGPKPFQFLDKNHKTIKMAENKSNSKDVGMFCMGLGTGFGSLDSSADKRETRQCSDDDDDFDDDDDDRDPPVQQLNLLPLAPVHRTSSSINSHLPFPWLADNLMTERGSSEGQGRGLDVNRLPGVGVEAGEDDQGTEDKGADMSSPNSAVSSFQMDIFVVGNGGGVGGGGGRNKRDMDQFESERASSRASDDEENGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTTTTAATATATTTASAAAATKHTTCQLGKPIIFPYSSSQTHQPAS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5522121 5523637 - Conep13aG0054700.1 Cone13ag0523 450910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0523 367 Gene3D - 211 261 - -
Cone13ag0523 367 SMART HOX_1 205 267 IPR001356 GO:0003677(InterPro)
Cone13ag0523 367 MobiDBLite consensus disorder prediction 50 88 - -
Cone13ag0523 367 ProSitePatterns 'Homeobox' domain signature. 238 261 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone13ag0523 367 MobiDBLite consensus disorder prediction 169 210 - -
Cone13ag0523 367 ProSiteProfiles 'Homeobox' domain profile. 203 263 IPR001356 GO:0003677(InterPro)
Cone13ag0523 367 Pfam HD-ZIP protein N terminus 78 161 IPR006712 GO:0005634(InterPro)
Cone13ag0523 367 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 41 339 IPR050762 -
Cone13ag0523 367 Pfam Homeodomain 207 261 IPR001356 GO:0003677(InterPro)
Cone13ag0523 367 Pfam Homeobox associated leucine zipper 263 297 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone13ag0523 367 SMART halz 263 306 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone13ag0523 367 Coils Coil 269 299 - -
Cone13ag0523 367 CDD homeodomain 207 264 IPR001356 GO:0003677(InterPro)
Cone13ag0523 367 FunFam Homeobox-leucine zipper protein 18 191 268 - -
Cone13ag0523 367 MobiDBLite consensus disorder prediction 182 210 - -
Cone13ag0523 367 MobiDBLite consensus disorder prediction 115 156 - -
Cone13ag0523 367 SUPERFAMILY Homeodomain-like 197 264 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0188 Cone-Chr12:964039 Cone13ag0523 Cone-Chr13:5522121 1.03E-51 dispersed
Cone13ag0523 Cone-Chr13:5522121 Cone17ag0307 Cone-Chr17:1456852 1.23E-84 dispersed
Cone13ag0523 Cone-Chr13:5522121 Cone19ag0475 Cone-Chr19:3895198 1.82E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44607 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0523 K09338 - vvi:100265773 389.037