Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0534 ATGGAATCCATGGAAATCGATTCGGAGAAGAGTCTTCAGAGAAAGCAGTCCACCTACAAACCGCTGGATGAGAACTATGGAATTCAGAAGGAGACGTATAGGGGTCAGCAGTACAGCCAGATTTACTTTGCTCGGCTTCACTTGATGAGAACGCTTCTCTACTCCCTTGTTCCTAACTGGAAATCACATTTACCTGTTTGCACTGTCTTGGGATTGGAAAAAGACAAGGAATGCATCATAGTTGGAACCTTGTACAAGCACATGAAACTAAAACCTACCATTCTGGATGAGTATTCTAAGGAGAGATCAGCCACCCCACTTGCCATGCCCCGTAACTTTATTCACCCGGATGATCAACTAGTTTTGGAAGATGAAAGTGGGAGAGTTAAGCTTTCTGGAACTGTGCTTCTTCCTTCTGCATATGTAACAGGGACTGTTGCTGCATTGCATGGGAAGGAAACTGGTGCTGGTGACTTTTTGGTTTTAGATGTCATGGAAGCTGGTCTACCACCCCAGATAGAGCTGCCACTGTTAAGAGAGGATAAGTATGTGGTATTTGTGTCAGGGCTAAACATTGGGAGCAGATCTAATCCTCTCCAGTTTCAGCTTCTTGTTGATCATATAACTGGACATTTAGGAGATGAGAAGGAACAGGGTATTGCAGCCCAAATAGTGCAGGTTGTAATTGCTGGAAATTCTATTGAAATCCCCAATGGGATTGTCAACGGGCAGAATTTGGCTGCCAAGGATCAATCAACGCTCTCCCAGCCAATCATGGAACTGGATATCTTATTGACTCAGCTTTCCGGGGGCTTGCCTGTTGACATCATGCCAGGCCCCAATGACCCAGCCAACTATGCCTTACCTCAGCAGCCCTTGCACAGATGCCTTTTCCCTGGATCATCAGCTTATAACACTTTTAGATCCTGTACTAACCCTCACTGCTTTGAGCTTGACAACATAAGATTTCTCGGAACATCAGGTCAGAACATAGATGATCTTGATAAATATTCAGAAGCAAAGGATAGGCTTGAATTTATGGAGAGGACATTAAAGTGGAGACATATAGCCCCAACAGCTCCCAACACTCTTGGATGCTATCCTTTTACTGATAGGGATCCTTTCATGCTCGAGAACTGTCCTCATGTTTATTACATTGGTAATCAGGATAAATATGATACTCGCTTGATCAAAGGTGCAGGAGGGCAGCTGGTAAGACTCATTTGCATTCCTAAGTTCTGCGAGACTGGAATTGCTGTTATGCTAAACATGAGGAATCTGGACTGTCACACTCTAAGCTTCGCAACGGAAATCAGTTCATAA 1323 44.14 MESMEIDSEKSLQRKQSTYKPLDENYGIQKETYRGQQYSQIYFARLHLMRTLLYSLVPNWKSHLPVCTVLGLEKDKECIIVGTLYKHMKLKPTILDEYSKERSATPLAMPRNFIHPDDQLVLEDESGRVKLSGTVLLPSAYVTGTVAALHGKETGAGDFLVLDVMEAGLPPQIELPLLREDKYVVFVSGLNIGSRSNPLQFQLLVDHITGHLGDEKEQGIAAQIVQVVIAGNSIEIPNGIVNGQNLAAKDQSTLSQPIMELDILLTQLSGGLPVDIMPGPNDPANYALPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNIRFLGTSGQNIDDLDKYSEAKDRLEFMERTLKWRHIAPTAPNTLGCYPFTDRDPFMLENCPHVYYIGNQDKYDTRLIKGAGGQLVRLICIPKFCETGIAVMLNMRNLDCHTLSFATEISS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5604101 5606822 - Conep13aG0055800.1 Cone13ag0534 450921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0534 440 Pfam DNA polymerase delta subunit OB-fold domain 37 164 IPR040663 -
Cone13ag0534 440 CDD MPP_PolD2_C 183 434 IPR041863 -
Cone13ag0534 440 Gene3D - 172 439 - -
Cone13ag0534 440 FunFam DNA polymerase delta subunit 2 43 167 - -
Cone13ag0534 440 FunFam DNA polymerase delta small subunit 170 440 - -
Cone13ag0534 440 Gene3D - 44 167 - -
Cone13ag0534 440 Pfam DNA polymerase alpha/epsilon subunit B 184 392 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone13ag0534 440 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 7 432 IPR024826 GO:0006271(PANTHER)|GO:0042575(PANTHER)|GO:0043625(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0534 Cone-Chr13:5604101 Cone19ag0482 Cone-Chr19:3984410 1.07e-317 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0534 K02328 - vvi:100241865 756.903