Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0543 ATGGCGTCGGACTCGTTCACCGACTCACTCAATGGGCTGAAATTTGGCCAGAATGTCTACTTTAAGGATGTGGTGACTGGACCAGGCGGAGAATCTTCCAACACTTCCTCTTCTCCATCTTCACCTCTGCCCAAGAGGATGAGGGGCGGCAGCCAGAGCGGTGATGGTCGTCCAAGATGTCAGGTTGAAGAGTGTGAAGAAGATCTAAGGGGTGTAAAGAGTTACTATTCCCGCCATAAAGTTTGTACAATGCATTCCAAATCTCCTAAGGCCATAGTCAATGGTCTCACCCAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCTACTCCATGAATTTGACCAAGGAAAAAGGAGTTGTAGAAGGCGTCTTGCTGGTCATAATGAACGTAGGAGAAAACCGCAATCGGGTTCCTTACTATCCATGCATTATTCTCGCCTCTCCTCCTCTATCTTTGAAAACATGTCCAGTGCTGCTTATCCAGGAAACTTTCTTCAAAGCTCTATAGGTGGGACTGGATATGTGGGTCCCGCACTTAGTTCGGGAGAATGTAACATAGGGGTGGACACTGACTCAATTTGTGCTCTCTCTCTTCTGTCAAGTCAAGCATGCTGCTCTAAACCCTGTACTTGGGCATGGGGTGCCCCTGGCTCGAACCATGGCTCATTTGGTCAAGCCGTTCACTTTCCGCTTACTAGTAGCGGTTTGCATGAGAAGGCGGCCTCTTCTGATATGGGTTTGAGGCAAATTTCACAGCCTTCTAATGGTTTGTGTTGA 777 47.75 MASDSFTDSLNGLKFGQNVYFKDVVTGPGGESSNTSSSPSSPLPKRMRGGSQSGDGRPRCQVEECEEDLRGVKSYYSRHKVCTMHSKSPKAIVNGLTQRFCQQCSRFHLLHEFDQGKRSCRRRLAGHNERRRKPQSGSLLSMHYSRLSSSIFENMSSAAYPGNFLQSSIGGTGYVGPALSSGECNIGVDTDSICALSLLSSQACCSKPCTWAWGAPGSNHGSFGQAVHFPLTSSGLHEKAASSDMGLRQISQPSNGLC 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5691888 5692861 + Conep13aG0056700.1 Cone13ag0543 450930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0543 258 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 220 IPR044817 GO:0003677(InterPro)
Cone13ag0543 258 MobiDBLite consensus disorder prediction 26 60 - -
Cone13ag0543 258 Gene3D - 50 121 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0543 258 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677(InterPro)
Cone13ag0543 258 MobiDBLite consensus disorder prediction 28 47 - -
Cone13ag0543 258 FunFam Squamosa promoter-binding-like protein 14 51 121 - -
Cone13ag0543 258 Pfam SBP domain 60 133 IPR004333 GO:0003677(InterPro)
Cone13ag0543 258 SUPERFAMILY SBT domain 58 137 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0721 Cone-Chr11:4985716 Cone13ag0543 Cone-Chr13:5691888 1.44E-18 dispersed
Cone12ag0807 Cone-Chr12:7343607 Cone13ag0543 Cone-Chr13:5691888 3.15E-36 dispersed
Cone13ag0543 Cone-Chr13:5691888 Cone8ag0756 Cone-Chr8:7654420 3.43E-33 dispersed
Cone10ag0071 Cone-Chr10:411326 Cone13ag0543 Cone-Chr13:5691888 1.76E-48 wgd
Cone13ag0543 Cone-Chr13:5691888 Cone3ag0085 Cone-Chr3:494808 9.66E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44610 PF01758 SBF 1.10E-30 CL0064 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0543 - - - 0.0