Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0543 ATGGCGTCGGACTCGTTCACCGACTCACTCAATGGGCTGAAATTTGGCCAGAATGTCTACTTTAAGGATGTGGTGACTGGACCAGGCGGAGAATCTTCCAACACTTCCTCTTCTCCATCTTCACCTCTGCCCAAGAGGATGAGGGGCGGCAGCCAGAGCGGTGATGGTCGTCCAAGATGTCAGGTTGAAGAGTGTGAAGAAGATCTAAGGGGTGTAAAGAGTTACTATTCCCGCCATAAAGTTTGTACAATGCATTCCAAATCTCCTAAGGCCATAGTCAATGGTCTCACCCAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCTACTCCATGAATTTGACCAAGGAAAAAGGAGTTGTAGAAGGCGTCTTGCTGGTCATAATGAACGTAGGAGAAAACCGCAATCGGGTTCCTTACTATCCATGCATTATTCTCGCCTCTCCTCCTCTATCTTTGAAAACATGTCCAGTGCTGCTTATCCAGGAAACTTTCTTCAAAGCTCTATAGGTGGGACTGGATATGTGGGTCCCGCACTTAGTTCGGGAGAATGTAACATAGGGGTGGACACTGACTCAATTTGTGCTCTCTCTCTTCTGTCAAGTCAAGCATGCTGCTCTAAACCCTGTACTTGGGCATGGGGTGCCCCTGGCTCGAACCATGGCTCATTTGGTCAAGCCGTTCACTTTCCGCTTACTAGTAGCGGTTTGCATGAGAAGGCGGCCTCTTCTGATATGGGTTTGAGGCAAATTTCACAGCCTTCTAATGGTTTGTGTTGA 777 47.75 MASDSFTDSLNGLKFGQNVYFKDVVTGPGGESSNTSSSPSSPLPKRMRGGSQSGDGRPRCQVEECEEDLRGVKSYYSRHKVCTMHSKSPKAIVNGLTQRFCQQCSRFHLLHEFDQGKRSCRRRLAGHNERRRKPQSGSLLSMHYSRLSSSIFENMSSAAYPGNFLQSSIGGTGYVGPALSSGECNIGVDTDSICALSLLSSQACCSKPCTWAWGAPGSNHGSFGQAVHFPLTSSGLHEKAASSDMGLRQISQPSNGLC 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5691888 5692861 + Conep13aG0056700.1 Cone13ag0543 450930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0543 258 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 220 IPR044817 GO:0003677(InterPro)
Cone13ag0543 258 MobiDBLite consensus disorder prediction 26 60 - -
Cone13ag0543 258 Gene3D - 50 121 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0543 258 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677(InterPro)
Cone13ag0543 258 MobiDBLite consensus disorder prediction 28 47 - -
Cone13ag0543 258 FunFam Squamosa promoter-binding-like protein 14 51 121 - -
Cone13ag0543 258 Pfam SBP domain 60 133 IPR004333 GO:0003677(InterPro)
Cone13ag0543 258 SUPERFAMILY SBT domain 58 137 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0543 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0721 Cone-Chr11:4985716 Cone13ag0543 Cone-Chr13:5691888 1.44E-18 dispersed
Cone12ag0807 Cone-Chr12:7343607 Cone13ag0543 Cone-Chr13:5691888 3.15E-36 dispersed
Cone13ag0543 Cone-Chr13:5691888 Cone8ag0756 Cone-Chr8:7654420 3.43E-33 dispersed
Cone10ag0071 Cone-Chr10:411326 Cone13ag0543 Cone-Chr13:5691888 1.76E-48 wgd
Cone13ag0543 Cone-Chr13:5691888 Cone3ag0085 Cone-Chr3:494808 9.66E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1249 . Blo12g00604 . . . . . Bma10g00183 Cmo06g00082 . . . . . . . Cpe08g01392 . . . . . . . . . . . . . . Cone3ag0085 Cone10ag0071 Cone13ag0543 . . . . Cme04g02228 Blo07g01269 . . Bda05g01077 . Bpe02g00012 . Bma04g00469 . . . Cma06g00089 . Car06g00078 Car14g00393 Cpe03g00379 . . . . . . . . Cla10g01657 Cam10g1705 Cec10g1757 Cco10g1722 Clacu10g1725 Cmu10g2477 Cre10g1855 Lsi03g01724 Csa03g03589 Chy04g01766 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003140 4 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 3 2 2 2 1 1 3 1 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44610 PF01758 SBF 1.10E-30 CL0064 Cone TF