Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0546 | ATGGATTCAAATAGTAATAAAAGACCACAACAACAGCAGCAGCAGCAGCCGGAGCAACAGAACATGCGGATTCAGACCTACTTACAAGAACATCAATCTCATCAGCCTCATCATCAGATACCATATGGAATTTCGTCTTCATCTTCCTCCCCTATCCCTCCAAATTTCATAAGCAAAGACGGTATTGGAGCTTATGATTTGGGAGAATTGGATCAAGCTCTTTTTCTTTATTTTGATGGACAGGACCCGGCTAGTTCCAATGTTCAACATAATAGCTCTGGATCAATGAGATCACCTCCTACTTTGAACATCTTCCCGTCAAGGCCTATGCACGTGGAGCCTTCACCAACCAATGTTAGTACGGTATTGATATCTCAAGCTGCAAACAGTAGCGATCCAAATCGAGCAGCGGATCACTCATCCATGGACAAAGCTATGAATATCGTATCCGGATCAGGACCCGAACCGGCCAAATCTGTCAAGCGTGAGAGTGGCCGCAAATTAGGTCCAACGTCAAGTTCAGAGCAGGAAGCACCAAAGACACCAGACCCTAAGACGTTAAGGAGACTGGCTCAGAATAGAGAGGCGGCCAGGAAAAGCAGGCTCAGAAAGAAGGCATATGTCCAGCAGCTAGAATCTAGTAGAATTAAGCTTTCTCAGTTGGAGCAAGAACTACAAAGAGCTAGATCTCAGGGAATGTTTTTTGGTGGAGGAGCACTCATAGGGGGTGATCAACAAGGACTTCCAATTGGTATCAACAACATCAGCACAGAAGCGGCGGTGTTTGACATGGAATATGCAAGATGGATGGAAGAGCAAAACAGGCTTCTCTGCGAGCTGAGGGCGGCAGTGCAAGAACATTTAGCTGAGAATGAGCTGAGGCTGTTCGTTGAAAACATCATAGCTCACTACGATGCAATCGTGAATCTGAAGAGCATGGCTGCCAAGTCCGACGTATTTCATCTTTTCTCCGGCATGTGGAAGACTCCAGCCGAACGTTGTTTCATGTGGATGGGTGGATTTAGGCCGTCTGAGATCATCAAGATAGTGGTGGGCCCAATAGAGCCATTGACGGAGCAACAAATACTGGGCATATGTGGGTTACAGCAATCAACACAAGAAGCAGAGGAAGTCCTTTCACAAGGTCTAGAAGCTTTGAACCAGTCTCTAATGGACACCATAGCTTCTGATTCATTGAGCATTCCTCTTAACATGCCTAACTACATGGGCCAAATGGCCATGGCCATCAATAAGCTCTCCACTCTTGAAGATTTTCTCAGACAGGGAGATAACTTGAGGCAGCAGACGATACATAGGCTGGTAGAAATACTGACGACACGGCAGGCGGCGAAGTGCATGCTTGCGATGGCCGAATACTTCCATCGGCTTCGAGCTCTTAGCTCTCTCTGGTTGGTTCGTCCACGCCAAGAATGA | 1434 | 46.79 | MDSNSNKRPQQQQQQQPEQQNMRIQTYLQEHQSHQPHHQIPYGISSSSSSPIPPNFISKDGIGAYDLGELDQALFLYFDGQDPASSNVQHNSSGSMRSPPTLNIFPSRPMHVEPSPTNVSTVLISQAANSSDPNRAADHSSMDKAMNIVSGSGPEPAKSVKRESGRKLGPTSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQELQRARSQGMFFGGGALIGGDQQGLPIGINNISTEAAVFDMEYARWMEEQNRLLCELRAAVQEHLAENELRLFVENIIAHYDAIVNLKSMAAKSDVFHLFSGMWKTPAERCFMWMGGFRPSEIIKIVVGPIEPLTEQQILGICGLQQSTQEAEEVLSQGLEALNQSLMDTIASDSLSIPLNMPNYMGQMAMAINKLSTLEDFLRQGDNLRQQTIHRLVEILTTRQAAKCMLAMAEYFHRLRALSSLWLVRPRQE | 477 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5710710 | 5714819 | + | Conep13aG0057000.1 | Cone13ag0546 | 450933 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0546 | 477 | MobiDBLite | consensus disorder prediction | 146 | 188 | - | - | |
Cone13ag0546 | 477 | FunFam | BZIP family transcription factor | 184 | 233 | - | - | |
Cone13ag0546 | 477 | SMART | brlzneu | 181 | 268 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0546 | 477 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 183 | 227 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0546 | 477 | ProSiteProfiles | DOG1 domain profile. | 259 | 473 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cone13ag0546 | 477 | Pfam | bZIP transcription factor | 185 | 225 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0546 | 477 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 100 | 476 | - | - | |
Cone13ag0546 | 477 | MobiDBLite | consensus disorder prediction | 166 | 180 | - | - | |
Cone13ag0546 | 477 | Pfam | Seed dormancy control | 277 | 350 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cone13ag0546 | 477 | SUPERFAMILY | Leucine zipper domain | 185 | 227 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0546 | 477 | Coils | Coil | 204 | 231 | - | - | |
Cone13ag0546 | 477 | Gene3D | - | 184 | 233 | - | - | |
Cone13ag0546 | 477 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cone13ag0546 | 477 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 188 | 203 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0546 | 477 | CDD | bZIP_HBP1b-like | 185 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag1384 | Cone-Chr11:10034801 | Cone13ag0546 | Cone-Chr13:5710710 | 6.58E-89 | dispersed | |
Cone13ag0546 | Cone-Chr13:5710710 | Cone5ag0986 | Cone-Chr5:4227304 | 8.61E-119 | dispersed | |
Cone10ag0067 | Cone-Chr10:388728 | Cone13ag0546 | Cone-Chr13:5710710 | 3.61E-183 | wgd | |
Cone13ag0546 | Cone-Chr13:5710710 | Cone19ag0496 | Cone-Chr19:4105973 | 5.18E-292 | wgd | |
Cone13ag0546 | Cone-Chr13:5710710 | Cone3ag0081 | Cone-Chr3:472652 | 6.70E-177 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44611 | PF00069 | Pkinase | 2.70E-44 | CL0016 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0546 | K14431 | - | rcu:8277515 | 618.231 |