Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0546 ATGGATTCAAATAGTAATAAAAGACCACAACAACAGCAGCAGCAGCAGCCGGAGCAACAGAACATGCGGATTCAGACCTACTTACAAGAACATCAATCTCATCAGCCTCATCATCAGATACCATATGGAATTTCGTCTTCATCTTCCTCCCCTATCCCTCCAAATTTCATAAGCAAAGACGGTATTGGAGCTTATGATTTGGGAGAATTGGATCAAGCTCTTTTTCTTTATTTTGATGGACAGGACCCGGCTAGTTCCAATGTTCAACATAATAGCTCTGGATCAATGAGATCACCTCCTACTTTGAACATCTTCCCGTCAAGGCCTATGCACGTGGAGCCTTCACCAACCAATGTTAGTACGGTATTGATATCTCAAGCTGCAAACAGTAGCGATCCAAATCGAGCAGCGGATCACTCATCCATGGACAAAGCTATGAATATCGTATCCGGATCAGGACCCGAACCGGCCAAATCTGTCAAGCGTGAGAGTGGCCGCAAATTAGGTCCAACGTCAAGTTCAGAGCAGGAAGCACCAAAGACACCAGACCCTAAGACGTTAAGGAGACTGGCTCAGAATAGAGAGGCGGCCAGGAAAAGCAGGCTCAGAAAGAAGGCATATGTCCAGCAGCTAGAATCTAGTAGAATTAAGCTTTCTCAGTTGGAGCAAGAACTACAAAGAGCTAGATCTCAGGGAATGTTTTTTGGTGGAGGAGCACTCATAGGGGGTGATCAACAAGGACTTCCAATTGGTATCAACAACATCAGCACAGAAGCGGCGGTGTTTGACATGGAATATGCAAGATGGATGGAAGAGCAAAACAGGCTTCTCTGCGAGCTGAGGGCGGCAGTGCAAGAACATTTAGCTGAGAATGAGCTGAGGCTGTTCGTTGAAAACATCATAGCTCACTACGATGCAATCGTGAATCTGAAGAGCATGGCTGCCAAGTCCGACGTATTTCATCTTTTCTCCGGCATGTGGAAGACTCCAGCCGAACGTTGTTTCATGTGGATGGGTGGATTTAGGCCGTCTGAGATCATCAAGATAGTGGTGGGCCCAATAGAGCCATTGACGGAGCAACAAATACTGGGCATATGTGGGTTACAGCAATCAACACAAGAAGCAGAGGAAGTCCTTTCACAAGGTCTAGAAGCTTTGAACCAGTCTCTAATGGACACCATAGCTTCTGATTCATTGAGCATTCCTCTTAACATGCCTAACTACATGGGCCAAATGGCCATGGCCATCAATAAGCTCTCCACTCTTGAAGATTTTCTCAGACAGGGAGATAACTTGAGGCAGCAGACGATACATAGGCTGGTAGAAATACTGACGACACGGCAGGCGGCGAAGTGCATGCTTGCGATGGCCGAATACTTCCATCGGCTTCGAGCTCTTAGCTCTCTCTGGTTGGTTCGTCCACGCCAAGAATGA 1434 46.79 MDSNSNKRPQQQQQQQPEQQNMRIQTYLQEHQSHQPHHQIPYGISSSSSSPIPPNFISKDGIGAYDLGELDQALFLYFDGQDPASSNVQHNSSGSMRSPPTLNIFPSRPMHVEPSPTNVSTVLISQAANSSDPNRAADHSSMDKAMNIVSGSGPEPAKSVKRESGRKLGPTSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQELQRARSQGMFFGGGALIGGDQQGLPIGINNISTEAAVFDMEYARWMEEQNRLLCELRAAVQEHLAENELRLFVENIIAHYDAIVNLKSMAAKSDVFHLFSGMWKTPAERCFMWMGGFRPSEIIKIVVGPIEPLTEQQILGICGLQQSTQEAEEVLSQGLEALNQSLMDTIASDSLSIPLNMPNYMGQMAMAINKLSTLEDFLRQGDNLRQQTIHRLVEILTTRQAAKCMLAMAEYFHRLRALSSLWLVRPRQE 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5710710 5714819 + Conep13aG0057000.1 Cone13ag0546 450933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0546 477 MobiDBLite consensus disorder prediction 146 188 - -
Cone13ag0546 477 FunFam BZIP family transcription factor 184 233 - -
Cone13ag0546 477 SMART brlzneu 181 268 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0546 477 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0546 477 ProSiteProfiles DOG1 domain profile. 259 473 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone13ag0546 477 Pfam bZIP transcription factor 185 225 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0546 477 PANTHER TRANSCRIPTION FACTOR TGA9 100 476 - -
Cone13ag0546 477 MobiDBLite consensus disorder prediction 166 180 - -
Cone13ag0546 477 Pfam Seed dormancy control 277 350 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone13ag0546 477 SUPERFAMILY Leucine zipper domain 185 227 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0546 477 Coils Coil 204 231 - -
Cone13ag0546 477 Gene3D - 184 233 - -
Cone13ag0546 477 MobiDBLite consensus disorder prediction 1 55 - -
Cone13ag0546 477 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0546 477 CDD bZIP_HBP1b-like 185 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1384 Cone-Chr11:10034801 Cone13ag0546 Cone-Chr13:5710710 6.58E-89 dispersed
Cone13ag0546 Cone-Chr13:5710710 Cone5ag0986 Cone-Chr5:4227304 8.61E-119 dispersed
Cone10ag0067 Cone-Chr10:388728 Cone13ag0546 Cone-Chr13:5710710 3.61E-183 wgd
Cone13ag0546 Cone-Chr13:5710710 Cone19ag0496 Cone-Chr19:4105973 5.18E-292 wgd
Cone13ag0546 Cone-Chr13:5710710 Cone3ag0081 Cone-Chr3:472652 6.70E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44611 PF00069 Pkinase 2.70E-44 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0546 K14431 - rcu:8277515 618.231