Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0563 | ATGAATAACTTGACCGTTGAAACTGAAGATGCTTTTGCCAGTTTGCTAGAACTTGCTGCTAATGATGACATTGAGGGATTCAGGGCATCAGTTGAGCGTGATCCTTCTGGTATAGATGAAATTGGTCTTTGGTATGGTAGGCAAAAGGGCTCCAAGCAGATGGTTAATCAGCATAGAACTCCTTTAATGGTTGCTGCTACATATGGTAGCATTGAAATTATGAAGCTGATTCTTTCTTTGTCCGAATCCGATGTTAATCGTTCTGTTGGACTTGACAAAAGCACTGCCCTGCACTGTGCAGCGGCAGGTGGGGCTGTGAATGCTATTGAGGTTGTGAAACTGCTCTTAACAGCTGGTGCCGATCCAAATTTGGTGGATGGTAATGGAGGTCGTCCCGTTGATGTTATCGTCGTTCCTCCAAAGCTTCAAGATGTCAAATTAACTCTTGAAGCGCTGCTATCAACAAATGAGTCTTCTGGTGAATTTCAGGGACTAGTTTCAAGGAATTTCAATTCGGATTCTCCTCCTCTTCCAGCATCCCCTCAAAACGGTTCTTTCTCTAGTTCAGAAATAGTTTCTTCACCGACGAGGTCCAAGTTTAGTGATTTCCCTCTATCTTCTGCATCAGAAAAGAAAGAATACCCTGTTGACCCATCCCTCCCAGACATTAAGAACAGCATTTATGCAACCGATGAATTTAGGATGTATTCTTTTAAGGTGCGGCCTTGCTCACGTGCCTACTCTCATGATTGGACCGAGTGCCCTTTTGTCCATCCCGGAGAAAATGCTCGAAGGAGGGACCCAAGGAAGTTCCATTACAGTTGTGTTCCTTGTCCAGATTTCCGGAAGGGGGCTTGTAGACGAGGAGATATGTGTGAATATGCCCATGGAGTTTTTGAGTGTTGGCTTCACCCAGCACAATACAGAACTCGACTTTGCAAGGATGGTACAAGCTGCGCAAGGAGAGTCTGCTTCTTTGCCCACACTGCAGAAGAACTCCGCCCATTATATGTTTCCACAGGTTCTGCTGTCCCTTCTCCTCGTAGTGGTGCTTCCACTGCTGCTGCAATGGATTATGCGGCTGCTATGAACCTCTTACCTGGCTCTCCATCTTCAATGTCTGTCATGTCTCCTTCACCGTTCACTCCTCCTTTATCTCCATCTGCCAATGGCATGTCACACTCTTCCATGGCTTGGCCTCAACCAAATGTCCCAGCCTTGCATCTTCCTGGAAGCAATGTACAATCCAGTCGCCTGAGATCTTCTCTGAATGCAAGAGACATTCCAGTTGAGGACTATGATATGCTCTCTGATTTTGACGTGCATCAGCAACAGCTTCTAAGTCAATTTTCCTCTCTTTCCCAACCGTCTTTAAGTTCCAATGGTTTGGGTCGGTCTGGCCGAATGAAAATTCTAACACCTTCAAATCTTGATGATCTCTTTTCTGCTGAAAGTTCATCCCCCCGTTACTCTGATCAGGCATTGGCTTCTGCTGTTTTCTCTCCAACACATAAATCTGCCCTTCTCAATCAGTTTCAGCAGCAACAGAGTATGTTATCACCGATAAACACAAACTACTCTCCAAAAAATGTTGACCACCCTTTATTGCAGGCTTCTTTTGGGGTTCCATCTTCAGGCAGAATGTCTCCTAGAAATGTGGAACCCGTCTCACCATTAAGCTCTAGAATGTCTGTGTTAGCTCAGCGAGAGAAGCAACAACAATTTCGGAGCCTCAGTTCAAGGGAGCTTGGTTCCAATTCATCGACACTGGCTATGGGCTCTCCAATAAGTCCTTGGTCTAAATGGGGATCTTCTAATGGACAGGCTGATTGGACTGTTAATGCAGATGAATTTGGTAAGCTTCGTCGCTCTTCTTCATTTGAGCTTGGGAACAATGGGGAAGAGCCTGATTTATCATGGGTCCAATCACTTGTTAGAGAATCTCCAACAGAGTTGAAAGAGAAGCTAGCACCACCCCAGCTGCCACCACCACAGCCTCCACCACCACCACCTACATCGGGTGGTATGACCACTGCTTCCTCCAGTGAGACTTCTATTATGAATTCCCAGATGGAAGCAGTGGATCAGGCAGTTTTGGGGGCATGGCTTGAGAAAATGCAGCTAGATCATCTCGTTGCTCAGCAAAACTGA | 2151 | 45.93 | MNNLTVETEDAFASLLELAANDDIEGFRASVERDPSGIDEIGLWYGRQKGSKQMVNQHRTPLMVAATYGSIEIMKLILSLSESDVNRSVGLDKSTALHCAAAGGAVNAIEVVKLLLTAGADPNLVDGNGGRPVDVIVVPPKLQDVKLTLEALLSTNESSGEFQGLVSRNFNSDSPPLPASPQNGSFSSSEIVSSPTRSKFSDFPLSSASEKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTAEELRPLYVSTGSAVPSPRSGASTAAAMDYAAAMNLLPGSPSSMSVMSPSPFTPPLSPSANGMSHSSMAWPQPNVPALHLPGSNVQSSRLRSSLNARDIPVEDYDMLSDFDVHQQQLLSQFSSLSQPSLSSNGLGRSGRMKILTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSALLNQFQQQQSMLSPINTNYSPKNVDHPLLQASFGVPSSGRMSPRNVEPVSPLSSRMSVLAQREKQQQFRSLSSRELGSNSSTLAMGSPISPWSKWGSSNGQADWTVNADEFGKLRRSSSFELGNNGEEPDLSWVQSLVRESPTELKEKLAPPQLPPPQPPPPPPTSGGMTTASSSETSIMNSQMEAVDQAVLGAWLEKMQLDHLVAQQN | 716 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5816285 | 5820168 | - | Conep13aG0058700.1 | Cone13ag0563 | 450950 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0563 | 716 | PRINTS | Ankyrin repeat signature | 58 | 73 | IPR002110 | GO:0005515(InterPro) | |
Cone13ag0563 | 716 | PRINTS | Ankyrin repeat signature | 111 | 125 | IPR002110 | GO:0005515(InterPro) | |
Cone13ag0563 | 716 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 276 | 297 | IPR000571 | GO:0046872(InterPro) | |
Cone13ag0563 | 716 | Gene3D | - | 4 | 150 | IPR036770 | - | |
Cone13ag0563 | 716 | MobiDBLite | consensus disorder prediction | 675 | 691 | - | - | |
Cone13ag0563 | 716 | MobiDBLite | consensus disorder prediction | 165 | 204 | - | - | |
Cone13ag0563 | 716 | FunFam | Zinc finger CCCH domain-containing protein 66 | 230 | 298 | - | - | |
Cone13ag0563 | 716 | MobiDBLite | consensus disorder prediction | 646 | 691 | - | - | |
Cone13ag0563 | 716 | ProSiteProfiles | Zinc finger C3H1-type profile. | 277 | 299 | IPR000571 | GO:0046872(InterPro) | |
Cone13ag0563 | 716 | SUPERFAMILY | Ankyrin repeat | 56 | 149 | IPR036770 | - | |
Cone13ag0563 | 716 | Pfam | Ankyrin repeats (3 copies) | 57 | 126 | IPR002110 | GO:0005515(InterPro) | |
Cone13ag0563 | 716 | ProSiteProfiles | Ankyrin repeat profile. | 92 | 127 | IPR002110 | GO:0005515(InterPro) | |
Cone13ag0563 | 716 | Gene3D | - | 273 | 335 | - | - | |
Cone13ag0563 | 716 | ProSiteProfiles | Ankyrin repeat region circular profile. | 92 | 126 | - | - | |
Cone13ag0563 | 716 | MobiDBLite | consensus disorder prediction | 656 | 674 | - | - | |
Cone13ag0563 | 716 | SMART | c3hfinal6 | 307 | 330 | IPR000571 | GO:0046872(InterPro) | |
Cone13ag0563 | 716 | SMART | c3hfinal6 | 272 | 298 | IPR000571 | GO:0046872(InterPro) | |
Cone13ag0563 | 716 | PANTHER | UNKEMPT FAMILY MEMBER | 42 | 649 | IPR045234 | - | |
Cone13ag0563 | 716 | MobiDBLite | consensus disorder prediction | 567 | 592 | - | - | |
Cone13ag0563 | 716 | SMART | ANK_2a | 92 | 124 | IPR002110 | GO:0005515(InterPro) | |
Cone13ag0563 | 716 | SMART | ANK_2a | 57 | 87 | IPR002110 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag1236 | Cone-Chr11:9259938 | Cone13ag0563 | Cone-Chr13:5816285 | 5.98e-311 | dispersed | |
Cone13ag0563 | Cone-Chr13:5816285 | Cone18ag0358 | Cone-Chr18:1739191 | 2.26e-313 | dispersed | |
Cone10ag0050 | Cone-Chr10:310015 | Cone13ag0563 | Cone-Chr13:5816285 | 0 | wgd | |
Cone13ag0563 | Cone-Chr13:5816285 | Cone19ag0515 | Cone-Chr19:4239380 | 0 | wgd | |
Cone13ag0563 | Cone-Chr13:5816285 | Cone3ag0063 | Cone-Chr3:379515 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44612 | PF02458 | Transferase | 1.20E-67 | CL0149 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0563 | - | - | - | 0.0 |