Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0563 ATGAATAACTTGACCGTTGAAACTGAAGATGCTTTTGCCAGTTTGCTAGAACTTGCTGCTAATGATGACATTGAGGGATTCAGGGCATCAGTTGAGCGTGATCCTTCTGGTATAGATGAAATTGGTCTTTGGTATGGTAGGCAAAAGGGCTCCAAGCAGATGGTTAATCAGCATAGAACTCCTTTAATGGTTGCTGCTACATATGGTAGCATTGAAATTATGAAGCTGATTCTTTCTTTGTCCGAATCCGATGTTAATCGTTCTGTTGGACTTGACAAAAGCACTGCCCTGCACTGTGCAGCGGCAGGTGGGGCTGTGAATGCTATTGAGGTTGTGAAACTGCTCTTAACAGCTGGTGCCGATCCAAATTTGGTGGATGGTAATGGAGGTCGTCCCGTTGATGTTATCGTCGTTCCTCCAAAGCTTCAAGATGTCAAATTAACTCTTGAAGCGCTGCTATCAACAAATGAGTCTTCTGGTGAATTTCAGGGACTAGTTTCAAGGAATTTCAATTCGGATTCTCCTCCTCTTCCAGCATCCCCTCAAAACGGTTCTTTCTCTAGTTCAGAAATAGTTTCTTCACCGACGAGGTCCAAGTTTAGTGATTTCCCTCTATCTTCTGCATCAGAAAAGAAAGAATACCCTGTTGACCCATCCCTCCCAGACATTAAGAACAGCATTTATGCAACCGATGAATTTAGGATGTATTCTTTTAAGGTGCGGCCTTGCTCACGTGCCTACTCTCATGATTGGACCGAGTGCCCTTTTGTCCATCCCGGAGAAAATGCTCGAAGGAGGGACCCAAGGAAGTTCCATTACAGTTGTGTTCCTTGTCCAGATTTCCGGAAGGGGGCTTGTAGACGAGGAGATATGTGTGAATATGCCCATGGAGTTTTTGAGTGTTGGCTTCACCCAGCACAATACAGAACTCGACTTTGCAAGGATGGTACAAGCTGCGCAAGGAGAGTCTGCTTCTTTGCCCACACTGCAGAAGAACTCCGCCCATTATATGTTTCCACAGGTTCTGCTGTCCCTTCTCCTCGTAGTGGTGCTTCCACTGCTGCTGCAATGGATTATGCGGCTGCTATGAACCTCTTACCTGGCTCTCCATCTTCAATGTCTGTCATGTCTCCTTCACCGTTCACTCCTCCTTTATCTCCATCTGCCAATGGCATGTCACACTCTTCCATGGCTTGGCCTCAACCAAATGTCCCAGCCTTGCATCTTCCTGGAAGCAATGTACAATCCAGTCGCCTGAGATCTTCTCTGAATGCAAGAGACATTCCAGTTGAGGACTATGATATGCTCTCTGATTTTGACGTGCATCAGCAACAGCTTCTAAGTCAATTTTCCTCTCTTTCCCAACCGTCTTTAAGTTCCAATGGTTTGGGTCGGTCTGGCCGAATGAAAATTCTAACACCTTCAAATCTTGATGATCTCTTTTCTGCTGAAAGTTCATCCCCCCGTTACTCTGATCAGGCATTGGCTTCTGCTGTTTTCTCTCCAACACATAAATCTGCCCTTCTCAATCAGTTTCAGCAGCAACAGAGTATGTTATCACCGATAAACACAAACTACTCTCCAAAAAATGTTGACCACCCTTTATTGCAGGCTTCTTTTGGGGTTCCATCTTCAGGCAGAATGTCTCCTAGAAATGTGGAACCCGTCTCACCATTAAGCTCTAGAATGTCTGTGTTAGCTCAGCGAGAGAAGCAACAACAATTTCGGAGCCTCAGTTCAAGGGAGCTTGGTTCCAATTCATCGACACTGGCTATGGGCTCTCCAATAAGTCCTTGGTCTAAATGGGGATCTTCTAATGGACAGGCTGATTGGACTGTTAATGCAGATGAATTTGGTAAGCTTCGTCGCTCTTCTTCATTTGAGCTTGGGAACAATGGGGAAGAGCCTGATTTATCATGGGTCCAATCACTTGTTAGAGAATCTCCAACAGAGTTGAAAGAGAAGCTAGCACCACCCCAGCTGCCACCACCACAGCCTCCACCACCACCACCTACATCGGGTGGTATGACCACTGCTTCCTCCAGTGAGACTTCTATTATGAATTCCCAGATGGAAGCAGTGGATCAGGCAGTTTTGGGGGCATGGCTTGAGAAAATGCAGCTAGATCATCTCGTTGCTCAGCAAAACTGA 2151 45.93 MNNLTVETEDAFASLLELAANDDIEGFRASVERDPSGIDEIGLWYGRQKGSKQMVNQHRTPLMVAATYGSIEIMKLILSLSESDVNRSVGLDKSTALHCAAAGGAVNAIEVVKLLLTAGADPNLVDGNGGRPVDVIVVPPKLQDVKLTLEALLSTNESSGEFQGLVSRNFNSDSPPLPASPQNGSFSSSEIVSSPTRSKFSDFPLSSASEKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTAEELRPLYVSTGSAVPSPRSGASTAAAMDYAAAMNLLPGSPSSMSVMSPSPFTPPLSPSANGMSHSSMAWPQPNVPALHLPGSNVQSSRLRSSLNARDIPVEDYDMLSDFDVHQQQLLSQFSSLSQPSLSSNGLGRSGRMKILTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSALLNQFQQQQSMLSPINTNYSPKNVDHPLLQASFGVPSSGRMSPRNVEPVSPLSSRMSVLAQREKQQQFRSLSSRELGSNSSTLAMGSPISPWSKWGSSNGQADWTVNADEFGKLRRSSSFELGNNGEEPDLSWVQSLVRESPTELKEKLAPPQLPPPQPPPPPPTSGGMTTASSSETSIMNSQMEAVDQAVLGAWLEKMQLDHLVAQQN 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5816285 5820168 - Conep13aG0058700.1 Cone13ag0563 450950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0563 716 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515(InterPro)
Cone13ag0563 716 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515(InterPro)
Cone13ag0563 716 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 297 IPR000571 GO:0046872(InterPro)
Cone13ag0563 716 Gene3D - 4 150 IPR036770 -
Cone13ag0563 716 MobiDBLite consensus disorder prediction 675 691 - -
Cone13ag0563 716 MobiDBLite consensus disorder prediction 165 204 - -
Cone13ag0563 716 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Cone13ag0563 716 MobiDBLite consensus disorder prediction 646 691 - -
Cone13ag0563 716 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Cone13ag0563 716 SUPERFAMILY Ankyrin repeat 56 149 IPR036770 -
Cone13ag0563 716 Pfam Ankyrin repeats (3 copies) 57 126 IPR002110 GO:0005515(InterPro)
Cone13ag0563 716 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Cone13ag0563 716 Gene3D - 273 335 - -
Cone13ag0563 716 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Cone13ag0563 716 MobiDBLite consensus disorder prediction 656 674 - -
Cone13ag0563 716 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Cone13ag0563 716 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Cone13ag0563 716 PANTHER UNKEMPT FAMILY MEMBER 42 649 IPR045234 -
Cone13ag0563 716 MobiDBLite consensus disorder prediction 567 592 - -
Cone13ag0563 716 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Cone13ag0563 716 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1236 Cone-Chr11:9259938 Cone13ag0563 Cone-Chr13:5816285 5.98e-311 dispersed
Cone13ag0563 Cone-Chr13:5816285 Cone18ag0358 Cone-Chr18:1739191 2.26e-313 dispersed
Cone10ag0050 Cone-Chr10:310015 Cone13ag0563 Cone-Chr13:5816285 0 wgd
Cone13ag0563 Cone-Chr13:5816285 Cone19ag0515 Cone-Chr19:4239380 0 wgd
Cone13ag0563 Cone-Chr13:5816285 Cone3ag0063 Cone-Chr3:379515 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44612 PF02458 Transferase 1.20E-67 CL0149 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0563 - - - 0.0