Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0617 | ATGGGCATGGCTGCCGAGTCACAGTTTCATGTTTTAGCCGTTGATGATAGCCTTATTGACAGAAAGCTTATTGAGAGGCTCCTTAAAACCTCTTCATATCAAGTTACTACCGTTGATTCTGGTAGCAAGGCTTTAGAATTTCTGGGGTTGTATGAAGACGAACAGAGCAACCCAAATACACCCTCTGTTTCTCCAAACAATCATCATGATGTGGAAGTGAATCTTGTTATTACAGATTACTGTATGCCTGGCATGACAGGCTATGATTTGCTTAAGAAAATTAAGGAATCATCATCTTTCAGAAACATACCTGTAGTGATCATGTCATCTGAAAATGTGCCTTCTAGGATCAACAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTTTTGAAACCAGTTAGATTATCTGATGTGAGTAAGCTAAAACCTCATATGATGAAATCTAAGTTCATGAATCAAAAATATGAAATTCAACGAAAACCAGAAGACAAAGAAGAAGAAGAAGAAAAAGAATCAGAAGAATCAGAAAAACAAAGCAGTCAAGTAGAAGAACAGCAACCATTGCCACCTCAACAACAGCAACAGTCCAATAATAACAATAACAGTAATAATAATAAAAGGAAGGCCATGGAAGAGGGTCTATCTTTATCACCCGATAGAACAAGAACCAGAAGATTTAATGATCTCACCACTGTAAACTGA | 702 | 37.04 | MGMAAESQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLYEDEQSNPNTPSVSPNNHHDVEVNLVITDYCMPGMTGYDLLKKIKESSSFRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDVSKLKPHMMKSKFMNQKYEIQRKPEDKEEEEEKESEESEKQSSQVEEQQPLPPQQQQQSNNNNNSNNNKRKAMEEGLSLSPDRTRTRRFNDLTTVN | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6253790 | 6255252 | - | Conep13aG0064100.1 | Cone13ag0617 | 451004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0617 | 233 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 6 | 208 | IPR045279 | GO:0009736(InterPro) | |
Cone13ag0617 | 233 | SUPERFAMILY | CheY-like | 8 | 153 | IPR011006 | - | |
Cone13ag0617 | 233 | MobiDBLite | consensus disorder prediction | 181 | 210 | - | - | |
Cone13ag0617 | 233 | MobiDBLite | consensus disorder prediction | 212 | 226 | - | - | |
Cone13ag0617 | 233 | Pfam | Response regulator receiver domain | 11 | 138 | IPR001789 | GO:0000160(InterPro) | |
Cone13ag0617 | 233 | ProSiteProfiles | Response regulatory domain profile. | 10 | 146 | IPR001789 | GO:0000160(InterPro) | |
Cone13ag0617 | 233 | SMART | REC_2 | 9 | 145 | IPR001789 | GO:0000160(InterPro) | |
Cone13ag0617 | 233 | MobiDBLite | consensus disorder prediction | 152 | 233 | - | - | |
Cone13ag0617 | 233 | Gene3D | - | 10 | 227 | - | - | |
Cone13ag0617 | 233 | Coils | Coil | 192 | 212 | - | - | |
Cone13ag0617 | 233 | Coils | Coil | 163 | 185 | - | - | |
Cone13ag0617 | 233 | CDD | REC_typeA_ARR | 11 | 141 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0621 | Cone-Chr12:5585406 | Cone13ag0617 | Cone-Chr13:6253790 | 7.14E-55 | dispersed | |
Cone13ag0113 | Cone-Chr13:685989 | Cone13ag0617 | Cone-Chr13:6253790 | 3.08E-50 | dispersed | |
Cone13ag0617 | Cone-Chr13:6253790 | Cone7ag0062 | Cone-Chr7:273575 | 3.24E-72 | dispersed | |
Cone13ag0617 | Cone-Chr13:6253790 | Cone19ag0548 | Cone-Chr19:4566224 | 2.55E-116 | wgd | |
Cone13ag0617 | Cone-Chr13:6253790 | Cone3ag0023 | Cone-Chr3:145504 | 1.58E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44615 | PF04969 | CS | 7.50E-07 | CL0190 | Cone | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0617 | K14492 | - | mtr:25499969 | 282.337 |