Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0617 ATGGGCATGGCTGCCGAGTCACAGTTTCATGTTTTAGCCGTTGATGATAGCCTTATTGACAGAAAGCTTATTGAGAGGCTCCTTAAAACCTCTTCATATCAAGTTACTACCGTTGATTCTGGTAGCAAGGCTTTAGAATTTCTGGGGTTGTATGAAGACGAACAGAGCAACCCAAATACACCCTCTGTTTCTCCAAACAATCATCATGATGTGGAAGTGAATCTTGTTATTACAGATTACTGTATGCCTGGCATGACAGGCTATGATTTGCTTAAGAAAATTAAGGAATCATCATCTTTCAGAAACATACCTGTAGTGATCATGTCATCTGAAAATGTGCCTTCTAGGATCAACAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTTTTGAAACCAGTTAGATTATCTGATGTGAGTAAGCTAAAACCTCATATGATGAAATCTAAGTTCATGAATCAAAAATATGAAATTCAACGAAAACCAGAAGACAAAGAAGAAGAAGAAGAAAAAGAATCAGAAGAATCAGAAAAACAAAGCAGTCAAGTAGAAGAACAGCAACCATTGCCACCTCAACAACAGCAACAGTCCAATAATAACAATAACAGTAATAATAATAAAAGGAAGGCCATGGAAGAGGGTCTATCTTTATCACCCGATAGAACAAGAACCAGAAGATTTAATGATCTCACCACTGTAAACTGA 702 37.04 MGMAAESQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLYEDEQSNPNTPSVSPNNHHDVEVNLVITDYCMPGMTGYDLLKKIKESSSFRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDVSKLKPHMMKSKFMNQKYEIQRKPEDKEEEEEKESEESEKQSSQVEEQQPLPPQQQQQSNNNNNSNNNKRKAMEEGLSLSPDRTRTRRFNDLTTVN 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6253790 6255252 - Conep13aG0064100.1 Cone13ag0617 451004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0617 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 208 IPR045279 GO:0009736(InterPro)
Cone13ag0617 233 SUPERFAMILY CheY-like 8 153 IPR011006 -
Cone13ag0617 233 MobiDBLite consensus disorder prediction 181 210 - -
Cone13ag0617 233 MobiDBLite consensus disorder prediction 212 226 - -
Cone13ag0617 233 Pfam Response regulator receiver domain 11 138 IPR001789 GO:0000160(InterPro)
Cone13ag0617 233 ProSiteProfiles Response regulatory domain profile. 10 146 IPR001789 GO:0000160(InterPro)
Cone13ag0617 233 SMART REC_2 9 145 IPR001789 GO:0000160(InterPro)
Cone13ag0617 233 MobiDBLite consensus disorder prediction 152 233 - -
Cone13ag0617 233 Gene3D - 10 227 - -
Cone13ag0617 233 Coils Coil 192 212 - -
Cone13ag0617 233 Coils Coil 163 185 - -
Cone13ag0617 233 CDD REC_typeA_ARR 11 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0621 Cone-Chr12:5585406 Cone13ag0617 Cone-Chr13:6253790 7.14E-55 dispersed
Cone13ag0113 Cone-Chr13:685989 Cone13ag0617 Cone-Chr13:6253790 3.08E-50 dispersed
Cone13ag0617 Cone-Chr13:6253790 Cone7ag0062 Cone-Chr7:273575 3.24E-72 dispersed
Cone13ag0617 Cone-Chr13:6253790 Cone19ag0548 Cone-Chr19:4566224 2.55E-116 wgd
Cone13ag0617 Cone-Chr13:6253790 Cone3ag0023 Cone-Chr3:145504 1.58E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44615 PF04969 CS 7.50E-07 CL0190 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0617 K14492 - mtr:25499969 282.337