Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone13ag0629 | ATGATGCAACCAGCTGATCAGAACTCATCAGAGCTATATAGATTGTTGGCCCAAAACGGGGTGTTTAACCACGTCGGTGAGTATGGTACTAGGAGTACTAATAGTTTTCCGGCCATGACGACTATGCAGAGGCAGAGCCTGTGTAGTAGCTCAAGTACTAGCTCATACAATTACCCCTTGGAGTTGTCGGGAATTACGGCGGAGCCACCTCCGCCAATATCCGGTAGCCATGATAGAGCTCGTGCTGCTTTGAAGAATCACAAGGAAGCCGAGAAGCGGCGGAGGGAGAGAATTAACGGTCACCTCGATAAGCTACGCAATCTCCTTCCTTGTAATTCTAAGACAGACAAAGCTTCGCTACTTGCAAAGGTTGTTCAACGTGTGAAGGAGCTAAAGCAGAAAGCCTTGGAGATCACGGAGCTGGAAACATTCCCATCGGAAACAGATGAAATCAGTGTCATGTCCGGTGATTATTCGAGCGATGGAAGATTGATATTCAAGGCATCATTGTGCTGCGAGGATCGGACCGACCTCATCCCGGACCTCATTGAAATACTAAACTCTCTCCACTTGAAGACCTTGAGGGCAGAAATGGCGACTCTAGGTGGAAGAATCCGGAACGTTCTTATAATTGCGGCCGATAAGGATCACAGCATCGAGTCCGTTCACTTCTTGCAAAACGCCTTGAAATATTTGGTGGAACGATCAAATTCTAACGATCGATCGAAGAGCCGTCGCGTGTTCGACCGTAAAATGTTTGTCCAATAA | 768 | 47.4 | MMQPADQNSSELYRLLAQNGVFNHVGEYGTRSTNSFPAMTTMQRQSLCSSSSTSSYNYPLELSGITAEPPPPISGSHDRARAALKNHKEAEKRRRERINGHLDKLRNLLPCNSKTDKASLLAKVVQRVKELKQKALEITELETFPSETDEISVMSGDYSSDGRLIFKASLCCEDRTDLIPDLIEILNSLHLKTLRAEMATLGGRIRNVLIIAADKDHSIESVHFLQNALKYLVERSNSNDRSKSRRVFDRKMFVQ | 255 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6384985 | 6386380 | - | Conep13aG0065300.1 | Cone13ag0629 | 451016 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone13ag0629 | 255 | Coils | Coil | 88 | 108 | - | - | |
| Cone13ag0629 | 255 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 82 | 131 | IPR011598 | GO:0046983(InterPro) | |
| Cone13ag0629 | 255 | Pfam | Helix-loop-helix DNA-binding domain | 86 | 132 | IPR011598 | GO:0046983(InterPro) | |
| Cone13ag0629 | 255 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 86 | 140 | IPR036638 | GO:0046983(InterPro) | |
| Cone13ag0629 | 255 | Coils | Coil | 121 | 141 | - | - | |
| Cone13ag0629 | 255 | FunFam | transcription factor bHLH30 | 77 | 140 | - | - | |
| Cone13ag0629 | 255 | SMART | finulus | 88 | 137 | IPR011598 | GO:0046983(InterPro) | |
| Cone13ag0629 | 255 | CDD | bHLH_AtAIG1_like | 78 | 153 | - | - | |
| Cone13ag0629 | 255 | Gene3D | - | 77 | 141 | IPR036638 | GO:0046983(InterPro) | |
| Cone13ag0629 | 255 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 35 | 249 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag0629 | Cone-Chr13:6384985 | Cone19ag0634 | Cone-Chr19:5476327 | 1.84E-161 | dispersed | |
| Cone13ag0629 | Cone-Chr13:6384985 | Cone6ag0475 | Cone-Chr6:2343077 | 8.10E-48 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44618 | PF00804 | Syntaxin | 3.90E-71 | CL0445 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone13ag0629 | - | - | - | 0.0 |