Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0664 ATGACAGATTCAGGAGAAAATCAGCAGCCTGAACAAGTTTGTAACTTCTTCAGAAAGTCAATAAAGAATAAAAGCATCAGAAAACGTACAGTCGATGAAGATGATAACGAGAATGACTCAAGAACCGAGACTTCAATTTTACAAAATCCGAAGAAAGCCCCAAAAACAGATAGCAAGCTCTTTTTCTCCTCCGGACGAGCTAAGCGCCCATCTACCGAATCTGATGTCGAACCCAGTAAACCATTCTTTCAATTTGAATCTTCAAAAGAGATCCAAGTTCAACATGATAATAAGGCAACAGCAACTCTAGAAACCGAGACGGAGTTTACAAGAGATGCTCGAGCCATTAGGGAGAGAGTTCTTAAGCAAGCAGATGAGGCATTGAAGAGTAACAAAAGTAAGGGTTCAGCTGATGAGAAGCTATACAAGGGAATCCATGGTTATAAAGATTACAAAGCAGGGTTTCGTAGAGAGCAAACAGTTTCTAGTGAGAAAGCTGGTGGATCTCATGGCCCGCTTAGGGCTTCTGCTCATATAAGGGTTTCTGCTAGGTTTGATTACCAGCCTGACATTTGCAAGGATTACAAAGAGACTGGTTATTGTGGGTATGGAGATTCTTGCAAGTTCATGCATGATCGTGGGGATTATAAGTCTGGTTGGCAGTTGGAAAAAGAATGGGATGAAGCAGAGAAAGCAAGGAAAAGGAAAATGGCTATGGGGTTGGAGGATGTTGAGGAAACAGCAGGGGCGGGTGATGAAGAAGAAGAAGATGATGATGCCTTGCCCTTTGCATGTTTCATTTGTAGGCAGCCATTTTTGGACCCAGTTGTAACCAAATGCAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCATCATTCAAAGAACAAGAAGTGCTTTGTTTGCAACCAGCCCACGCTCGGGATCTTCAATACAGCTCATGAGATACGCAAAAGGATAGCCGCAGAGGGTAAGTAA 978 42.74 MTDSGENQQPEQVCNFFRKSIKNKSIRKRTVDEDDNENDSRTETSILQNPKKAPKTDSKLFFSSGRAKRPSTESDVEPSKPFFQFESSKEIQVQHDNKATATLETETEFTRDARAIRERVLKQADEALKSNKSKGSADEKLYKGIHGYKDYKAGFRREQTVSSEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARKRKMAMGLEDVEETAGAGDEEEEDDDALPFACFICRQPFLDPVVTKCKHYFCEHCALKHHSKNKKCFVCNQPTLGIFNTAHEIRKRIAAEGK 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6616367 6618655 + Conep13aG0068800.1 Cone13ag0664 451051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0664 325 MobiDBLite consensus disorder prediction 27 80 - -
Cone13ag0664 325 SUPERFAMILY RING/U-box 264 308 - -
Cone13ag0664 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 322 IPR013083 -
Cone13ag0664 325 SUPERFAMILY CCCH zinc finger 185 217 IPR036855 GO:0046872(InterPro)
Cone13ag0664 325 CDD RING-HC_RNF113A_B 261 311 - -
Cone13ag0664 325 FunFam RING finger protein 113A 263 322 - -
Cone13ag0664 325 PANTHER ZINC FINGER PROTEIN 183 12 323 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Cone13ag0664 325 FunFam Zinc finger CCCH domain-containing protein 1 184 218 - -
Cone13ag0664 325 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872(InterPro)
Cone13ag0664 325 Pfam Zinc finger, C3HC4 type (RING finger) 264 306 - -
Cone13ag0664 325 Gene3D - 184 218 - -
Cone13ag0664 325 SMART c3hfinal6 186 213 IPR000571 GO:0046872(InterPro)
Cone13ag0664 325 ProSiteProfiles Zinc finger RING-type profile. 265 303 IPR001841 -
Cone13ag0664 325 SMART ring_2 265 302 IPR001841 -
Cone13ag0664 325 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 212 IPR000571 GO:0046872(InterPro)
Cone13ag0664 325 ProSitePatterns Zinc finger RING-type signature. 280 289 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0664 Cone-Chr13:6616367 Cone19ag0661 Cone-Chr19:5619055 9.05E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44621 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0664 K13127 - csv:101221334 503.442