Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0676 ATGGCCATTACCAGCTTTCCAGACTGGTCATTAGCTTCCATAATCCCCAGAAAAAGAACCCATCATTCCCATACCATATCCACCTGCAAATTCTCTCACCTTCTCTCTTCTCCCACCTCAAATCGTCCTCGCTTTCTCCATTCAAATTTATCCAACTCCCCCTCGTCAATCTTAGAAGAAGATCAAGAACAAAAACAACAACCACCACCAAATACACTTGATCTTAAAGTCCATCCTTCCTCCTCACCCAGTAGCAACGAAAACTTGAACGAATTTCTATCTGGATTGCTACAAGCTCCACAAAGCGAAGAACTAGTCTATGAATACTACGAGAAAGCGAAAGAAAAGCCCGAGTTCAGACCAGAACAATCAACGTTGACAAAACTCATCCTCTATCTGGTAAGATCAAAGAAATGGGATCTAATAATCTCAACTTCTAAAGATTTCAAGGATTATAATGTACCTTTACCTGATAAATCCACCTACTCTGCTTTAATCAGTAGCTGCATTAAAGCGAGAAAAATCAGAGTCGTAGAGGCTCTGCTTCAAGTCTGTGAATCAGACAACGAAATCACTCCGACCGCGTTCGAAACCGCCATGAAAGGCTACAACAAGCTTCACATGTTCAATCGGACCATATTAATTTTCCAACGAGCGAAAAGATCTTCTTCCACCATCAATGCCGATCCAGGTTGTTATTATAGAGTAATGGAAGCTTATCTCAAATCTGGAGATTCCGAAAAAGCCGTAGAATTATTCCACGAACTAGTCCACACCCATAAAGCAGACCTCAAACAATTCTCCCCTCCAATCTATCGGATTCACTGCGAATCATTAGCCCGTTCAGGAAGAGTTTCAGAAGCAATCCAGTTCTTCAGAAAAATACAGAAAAACAGAGTAATACAAGAAGACGTCTCAATCTACTCTGCTCTGATATGTAGTGTCGCAAGCAATGGACAAATCGACATGGCAGAAGAGCTCTTCAAAGAAGCAGAGAGCAAGAATATGTTAAGAGATCCAGAAATTTTTCTAAAACTCATCTTGATGTACATACAAAAAGGATTAATGGAAAAAACATTAGAAGTAGTCAACGTGATGAAGACGACTGCAAAACTCAAAGTAACCGATTGCATTTTCTGCGCCATAGTCAACGGCTATTCAAAACATAGAGGATACAGAGCGGCAGTTAAAGGTTACGAAGAGCTAACCTCACAAGGCTGCGAGCCAGGGCAGGTGACATACGCGTCGATAATCAACGCGTACTGCCGTTTAGGGCTAAATGCCCAAGCCGAAACGACATTTGAGAAGATGATCGAAAAAGGGTTCGACAAATGCGTGGTGGCGTATTCAAGCATGGTGGCGATGTACGGAAAAACAGGGAGGTTAAGGGAAGGAATGAGGCTTGTGGCGAAGATGAAGGAGAAGGGTTGTCAGCCAAACGTATGGATTTACAATACGTTGATGGATTTGCATGGGAAAGGGAAGGATTTGAGGCAAGTAGAGAAGGTATGGAAGGAGATGAAGAGGAGGAAGGTGAAGCCCGACAAGGTGAGTTATAGTTGTATCATAAGTGCGTATCACAAGGCAGGGGAGTATGAGATGTGCGAAAGGTATTATCATGAGTATAGGGTTAGTAGTAGTAAGGCATGTGGTGGGGGTGGAATCGACAAGGTGATGGGTGGGATCATGGTTGGGGTTTTTTCAAAGACGAGTCGGGTTGATGAGTTGGTTAAGCTTTTGAGGGATATGAAATCGGGAGGGACTGAGTTGGATGCTAGGCTTTTCAAGTCGGCTTTGAATGCTTTGAGGGATGCGGGGCTTCAGTCTCAGGCTCAATGGTTTAGAGCCAACTTTGTGGTTAGGTGA 1866 43.19 MAITSFPDWSLASIIPRKRTHHSHTISTCKFSHLLSSPTSNRPRFLHSNLSNSPSSILEEDQEQKQQPPPNTLDLKVHPSSSPSSNENLNEFLSGLLQAPQSEELVYEYYEKAKEKPEFRPEQSTLTKLILYLVRSKKWDLIISTSKDFKDYNVPLPDKSTYSALISSCIKARKIRVVEALLQVCESDNEITPTAFETAMKGYNKLHMFNRTILIFQRAKRSSSTINADPGCYYRVMEAYLKSGDSEKAVELFHELVHTHKADLKQFSPPIYRIHCESLARSGRVSEAIQFFRKIQKNRVIQEDVSIYSALICSVASNGQIDMAEELFKEAESKNMLRDPEIFLKLILMYIQKGLMEKTLEVVNVMKTTAKLKVTDCIFCAIVNGYSKHRGYRAAVKGYEELTSQGCEPGQVTYASIINAYCRLGLNAQAETTFEKMIEKGFDKCVVAYSSMVAMYGKTGRLREGMRLVAKMKEKGCQPNVWIYNTLMDLHGKGKDLRQVEKVWKEMKRRKVKPDKVSYSCIISAYHKAGEYEMCERYYHEYRVSSSKACGGGGIDKVMGGIMVGVFSKTSRVDELVKLLRDMKSGGTELDARLFKSALNALRDAGLQSQAQWFRANFVVR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6739139 6741318 + Conep13aG0070000.1 Cone13ag0676 451063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0676 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Cone13ag0676 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Cone13ag0676 621 Gene3D Tetratricopeptide repeat domain 87 273 IPR011990 GO:0005515(InterPro)
Cone13ag0676 621 Gene3D Tetratricopeptide repeat domain 274 435 IPR011990 GO:0005515(InterPro)
Cone13ag0676 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Cone13ag0676 621 NCBIfam pentatricopeptide repeat 412 442 IPR002885 -
Cone13ag0676 621 NCBIfam pentatricopeptide repeat 483 515 IPR002885 -
Cone13ag0676 621 NCBIfam pentatricopeptide repeat 447 481 IPR002885 -
Cone13ag0676 621 NCBIfam pentatricopeptide repeat 307 338 IPR002885 -
Cone13ag0676 621 SUPERFAMILY HCP-like 281 484 - -
Cone13ag0676 621 Pfam PPR repeat 406 437 IPR002885 -
Cone13ag0676 621 Pfam PPR repeat family 479 528 IPR002885 -
Cone13ag0676 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Cone13ag0676 621 SUPERFAMILY TPR-like 232 336 IPR011990 GO:0005515(InterPro)
Cone13ag0676 621 Gene3D Tetratricopeptide repeat domain 436 510 IPR011990 GO:0005515(InterPro)
Cone13ag0676 621 Gene3D Tetratricopeptide repeat domain 518 615 IPR011990 GO:0005515(InterPro)
Cone13ag0676 621 Pfam PPR repeat 447 477 IPR002885 -
Cone13ag0676 621 Pfam PPR repeat 160 183 IPR002885 -
Cone13ag0676 621 Pfam PPR repeat 236 256 IPR002885 -
Cone13ag0676 621 Pfam PPR repeat 278 299 IPR002885 -
Cone13ag0676 621 Pfam PPR repeat 562 587 IPR002885 -
Cone13ag0676 621 Pfam PPR repeat 307 335 IPR002885 -
Cone13ag0676 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 84 613 IPR051114 -
Cone13ag0676 621 MobiDBLite consensus disorder prediction 36 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0676 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0676 . . . . . . . . . . . . . . . . . Cmo15g00902 . Cma15g00867 . Car15g00816 . . Bhi12g01005 . . . . . Lcy10g1566 Cla01g00682 Cam01g0715 Cec01g0706 Cco01g0736 Clacu01g0701 Cmu01g0673 Cre09g1832 Lsi09g00740 Csa05g01316 . Cme09g01257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013247 0 3 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 27