Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0678 ATGAAGCGGGGTTTCGAGGAAATCTCCGACGACGAGTGGGAAAATCACTCCTTCAAGCCATCGCGTGTGCTGGACAAATCCAAGGCTGGAACTTCCTCTTCTCGTCCTCCTCCTCCTATTGAATCATTCTCTTATAATCGGTCACAGGAGCCGCAGAATTCCGGCGGCGGCAGCGACGATTGCGTCCTGCTCGGAGAAAACCCGCGGAATTTCGTGGAGAATTTGGAGGACGACGATGTGGAGGTCGAGGAGGTGCGGCCGTCTGCGGGGATTAATCGTACCCGTCGATTTGTGGTTGATGATGAGGAGAGCGATGGGGATGTTGCTCAGGTGTGTGATGTAAGTTGGACGAGCGACGAGGAAGTGGAGGAGGAGGAGGAGGAGGAAGTGGATGACGTGGTCGGTAAGGCTCTGCAGAAATGTGCGAAAATATCCGCTGAATTGAAGAGAGAGCTATACGGATCATCAGTCACGGCATGTGATCGATACGCTGAAGTGGAATCTTCTTCTGTGAGGATTGTGACTCAGGATGATGTTGATGCGGCATGCAAAGCAGATGATTCAGATTTTGAGCCCATCCTCAAGCCTTATCAGCTGGTTGGTGTGAACTTTCTTCTTCTGTTGTATAAGAAGGGAATTGGTGGAGCTATATTAGCTGATGAGATGGGTTTGGGTAAGACCATTCAGGCTATTACATATCTCACTCTTCTGAAATATTTAAACAACGATCCGGGACCTCATCTAATTGTATGCCCTGCTTCTGTTTTGGAGAACTGGGAAAGAGAACTAAAGAAGTGGTGTCCATCCTTCTCTGTTCTCCAGTATCATGGTGCTGGCAGATCAGCATATTCAAAAGAGTTGAGCTCCTTGGCAAAAGCAGGAATTGCACCTCCATTTAATGTTCTTCTTGTGTGTTACTCCCTCTTTGAAAGACACAGTGCGCAGCAGAAAGATGACCGTAAAACTCTGAAACGTTGGAAATGGAGCTGTGTTCTAATGGATGAGGCCCATGCATTGAAAGACAAAAACAGTTATAGGTGGAAAAACCTAATGTCTGTTGCAAGAAATGCCAACCAACGATTAATGCTGACAGGCACTCCCTTACAAAATGACTTGCATGAGCTTTGGTCATTATTGGAGTTTATGTTGCCTGATGTTTTTGCTAGCGAGGATGTGGATTTGAAAAAGCTATTAAATGCTGAGGATACAGATTTAATTAGTCATATGAAATCCATTTTGGGTCCATTTATTTTGAGGCGTCTTAAATCTGATGTGATGCAGCAACTTGTCACAAAGATACAGCGGGTTGAGTATGTTCCTATGGAAAAACGGCAGGAAGCTGCCTACAAAGAAGCCATTGAGGAATATCGTGCAGCTTCACGAGCTCGAGCTGGTAAAAATTCCGGGAATAACTTGAATGGTATATATGGAATGCTTCCTAAGCGGCAGATCTCTAACTACTTTTTCCAGTTCCGAAAGATTGCAAACCATCCTTTGCTGGTACGGAGCATATATAGTGATGAAGATGTTGAACGTTTTGCTTTAAAATTGCATCCAGTTGGTGCATTTGGCTTTGAGTGTAGCTTCGAAAGAGTGGTTGAGGAACTTAAGAGTTATAATGACTATGCAATCCACAGGCTCTTACATTCTTACAGTATATCTGATGAAAAGGGGACCCTTTCAGATAGACAAGTAATGCGCTCTGCAAAGTGTCGAGCATTATCTAAACTTCTCCCATCATTAAAAGAAGCTGGACACCGGGTTCTAATCTTCAGCCAATGGACATCAATGCTAGATATCTTGGAGTGGAGTTTGGACGTCATTGGGTTAGTATATAGACGACTTGATGGAAGTACTCCAGTAGCAGAGAGGCAGACGATAGTCGACACTTTCAATAACGACACATCTATATTTGCATGTTTGCTATCCACGAGAGCTGGGGGCCAGGGCTTGAACTTAACAGGGGCTGATACTGTTATTATACACGACATGGATTTTAACCCTCAGATTGACCGGCAAGCAGAGGATCGCTGCCATCGAATTGGACAAACAAAGCCAGTCACCATATACAGGTTAGTTACCAAGGGTACAGTTGACGAGAATGTTTATGAAATAGCCAAAAGAAAGCTAGTACTTGATGCTGCAGTCTTAGAATCTGGTATTGAGATGGATAATGAAGGCGGTGACACACCAGAGAAGAGTATGGGAGAGATATTGTCAGCCCTTCTTCTCGGTTAG 2238 44.64 MKRGFEEISDDEWENHSFKPSRVLDKSKAGTSSSRPPPPIESFSYNRSQEPQNSGGGSDDCVLLGENPRNFVENLEDDDVEVEEVRPSAGINRTRRFVVDDEESDGDVAQVCDVSWTSDEEVEEEEEEEVDDVVGKALQKCAKISAELKRELYGSSVTACDRYAEVESSSVRIVTQDDVDAACKADDSDFEPILKPYQLVGVNFLLLLYKKGIGGAILADEMGLGKTIQAITYLTLLKYLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAGRSAYSKELSSLAKAGIAPPFNVLLVCYSLFERHSAQQKDDRKTLKRWKWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDVFASEDVDLKKLLNAEDTDLISHMKSILGPFILRRLKSDVMQQLVTKIQRVEYVPMEKRQEAAYKEAIEEYRAASRARAGKNSGNNLNGIYGMLPKRQISNYFFQFRKIANHPLLVRSIYSDEDVERFALKLHPVGAFGFECSFERVVEELKSYNDYAIHRLLHSYSISDEKGTLSDRQVMRSAKCRALSKLLPSLKEAGHRVLIFSQWTSMLDILEWSLDVIGLVYRRLDGSTPVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNEGGDTPEKSMGEILSALLLG 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6750545 6755750 + Conep13aG0070200.1 Cone13ag0678 451065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0678 745 MobiDBLite consensus disorder prediction 1 65 - -
Cone13ag0678 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 385 IPR014001 -
Cone13ag0678 745 PANTHER SNF2/RAD54 HELICASE FAMILY 124 733 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0008094(PANTHER)
Cone13ag0678 745 FunFam Protein CHROMATIN REMODELING 19 isoform A 165 443 - -
Cone13ag0678 745 CDD SF2_C_SNF 560 693 IPR049730 -
Cone13ag0678 745 Gene3D - 431 744 IPR027417 -
Cone13ag0678 745 SMART helicmild6 599 682 IPR001650 -
Cone13ag0678 745 Pfam SNF2-related domain 197 498 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cone13ag0678 745 CDD DEXHc_Snf 194 387 - -
Cone13ag0678 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 721 IPR027417 -
Cone13ag0678 745 Pfam Helicase conserved C-terminal domain 570 682 IPR001650 -
Cone13ag0678 745 Gene3D - 163 414 IPR038718 -
Cone13ag0678 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 573 736 IPR001650 -
Cone13ag0678 745 MobiDBLite consensus disorder prediction 1 23 - -
Cone13ag0678 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 420 IPR027417 -
Cone13ag0678 745 SMART ultradead3 190 395 IPR014001 -
Cone13ag0678 745 MobiDBLite consensus disorder prediction 26 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0678 K14439 - - csv:116403816 1155.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0678 Cone-Chr13:6750545 Cone7ag0171 Cone-Chr7:714442 1.34E-86 dispersed
Cone19ag0668 Cone-Chr19:5692050 Cone13ag0678 Cone-Chr13:6750545 8.69E-196 transposed
Cone13ag0678 Cone-Chr13:6750545 Cone19ag0667 Cone-Chr19:5690220 4.24E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1106 . . . . . . . . . . . . Car04g00912 . . . . . . . . . . . . . . . . . . Cone13ag0678 Cone19ag0668 . . . . . . . . . . Bpe11g01720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010131 0 0 1 0 1 1 2 1 2 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 3 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44623 PF05116 S6PP 1.80E-98 CL0137 Cone TR