Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0679 ATGGCAACAAACAGGTTCATATGTGAAGTATGCAACAAAGGGTTCCAGAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTCCCTTGGAAGCTTAAGCAGAAGACAAACAAAGAGCCCAAGCGTAAAGTCTATCTCTGCCCCGAGCCCACTTGCGTCCACCACGACCAGTCTCGGGCTCTCGGCGACCTCACGGGAATAAAAAAGCACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAATGCTCAAAGAGATATGCTGTTCAGTCTGATTGGAAGGCTCATTCTAAGACTTGCGGCACTAGAGAATACAGATGTGATTGTGGTACTCTCTTCTCTAGGCGGGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCATTGGCTCAAGAGAGTGCAAGGCATCCACCAAGCCTTATAAGCTCCATGGGAAGCAATCTATATGGAACTAGCCATACAAGCTTAGACCTCTCTCAAGTGAGCCCTCACCTGTCAACAGTACTCCAAAACCACCCTCTACCCAATTCCGGTCATCATGATATCTTACGGCTTGGGACGACGCATAATCCTAAATTCGAAAACCTTATGAATCAACAACCTTCATCGGACGATGTTAATCTTATGCATAATCCAACCTCCTTCTTCCTATCAGATGCTGCTCAAGGCAGCTTCCAAAACAACAAGCCGCTGAATCCTCTTATGCAACTTCATCATGATCATCATCATCTTCATAGCAACAATAATGCAAGCAATATTACCTCTCCCAACTCATCTAGTACTCCTAATAATAATCTCTTCAACCACGGAAACAGCTTCTTCTTCAACTACAATGCCAATACTAGTACTACTACAGGAGATTTTGACATGAACGGGAATAATGGTGGGAACCAATTAAACTTCCCATCTAACATGAGTGGTAGTAGCATTCATTCTGATCATAACCTAATTTCCACAGCTGGTACTATGTCTTCTCTCTACGGACACGATCATCATCATCATCATCAGCCAGTGCAACCGAAGAATATTAACTCGGCCCACATGTCCGCTACGGCATTACTTCAAAAGGCTGCTGAAATGGGTTCAACTACAAGCACCAATAATAGTACCACTTCTTCGTCTTTGCTAAAGGGCCTTCATGGTAGTTCCATAAATAATGCGAAGTCCGACCGACAACTTCTGAATGACGTTTTCGGTAACGACGGTACGGTGCTAGAAAACGAGAGCATCCAGCTTCAAGGATTAATGAAGTCTCTAGCCAATTATAGTTCTTCCATATACGGAAGCAGTAGTACTAATATTACTCATGATCATGATCATCAGAATGGACAGGAGAATTACATGAATCAGAAAACGTTTGGGGAGTATAGTAATTTTGGAAACATGCAGCAGGCTCATCATGATCAGGCGAGTAAGTTGCATCAAAATCTGGCTCGGTCTGACAAGTTAACGTTGGATTTTCTAGGTGTGGGTGGGTTTGTAAGAAACATGCAGGGTGGTGGGTATAATTCACAGACTAGATCAGACCAGCAGCAGCAACATCATAGTACTCTTCAAGCAGGGACCTCTTTGGATCCGGCCGGGCTGAAATCAGGGCAGACAGGTCAACATTTTGGAGGCGCACTACATTGA 1644 44.59 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDQSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPSLISSMGSNLYGTSHTSLDLSQVSPHLSTVLQNHPLPNSGHHDILRLGTTHNPKFENLMNQQPSSDDVNLMHNPTSFFLSDAAQGSFQNNKPLNPLMQLHHDHHHLHSNNNASNITSPNSSSTPNNNLFNHGNSFFFNYNANTSTTTGDFDMNGNNGGNQLNFPSNMSGSSIHSDHNLISTAGTMSSLYGHDHHHHHQPVQPKNINSAHMSATALLQKAAEMGSTTSTNNSTTSSSLLKGLHGSSINNAKSDRQLLNDVFGNDGTVLENESIQLQGLMKSLANYSSSIYGSSSTNITHDHDHQNGQENYMNQKTFGEYSNFGNMQQAHHDQASKLHQNLARSDKLTLDFLGVGGFVRNMQGGGYNSQTRSDQQQQHHSTLQAGTSLDPAGLKSGQTGQHFGGALH 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6757015 6760638 + Conep13aG0070300.1 Cone13ag0679 451066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0679 547 Pfam Zinc-finger of C2H2 type 6 28 IPR013087 -
Cone13ag0679 547 MobiDBLite consensus disorder prediction 503 547 - -
Cone13ag0679 547 FunFam Zinc finger protein MAGPIE 2 29 - -
Cone13ag0679 547 SMART c2h2final6 47 77 IPR013087 -
Cone13ag0679 547 SMART c2h2final6 6 28 IPR013087 -
Cone13ag0679 547 SMART c2h2final6 82 102 IPR013087 -
Cone13ag0679 547 Gene3D Classic Zinc Finger 6 45 - -
Cone13ag0679 547 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Cone13ag0679 547 MobiDBLite consensus disorder prediction 503 534 - -
Cone13ag0679 547 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Cone13ag0679 547 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Cone13ag0679 547 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 512 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone13ag0679 547 Gene3D Classic Zinc Finger 46 130 - -
Cone13ag0679 547 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Cone13ag0679 547 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 108 147 - -
Cone13ag0679 547 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 81 105 - -
Cone13ag0679 547 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 43 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0679 Cone-Chr13:6757015 Cone19ag0670 Cone-Chr19:5703595 2.01E-123 dispersed
Cone13ag0679 Cone-Chr13:6757015 Cone13ag0680 Cone-Chr13:6762851 6.02E-119 tandem
Cone13ag0679 Cone-Chr13:6757015 Cone19ag0669 Cone-Chr19:5696424 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44624 PF05116 S6PP 2.10E-98 CL0137 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0679 K25870 - mdm:103403455 475.707