Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0679 | ATGGCAACAAACAGGTTCATATGTGAAGTATGCAACAAAGGGTTCCAGAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTCCCTTGGAAGCTTAAGCAGAAGACAAACAAAGAGCCCAAGCGTAAAGTCTATCTCTGCCCCGAGCCCACTTGCGTCCACCACGACCAGTCTCGGGCTCTCGGCGACCTCACGGGAATAAAAAAGCACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAATGCTCAAAGAGATATGCTGTTCAGTCTGATTGGAAGGCTCATTCTAAGACTTGCGGCACTAGAGAATACAGATGTGATTGTGGTACTCTCTTCTCTAGGCGGGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCATTGGCTCAAGAGAGTGCAAGGCATCCACCAAGCCTTATAAGCTCCATGGGAAGCAATCTATATGGAACTAGCCATACAAGCTTAGACCTCTCTCAAGTGAGCCCTCACCTGTCAACAGTACTCCAAAACCACCCTCTACCCAATTCCGGTCATCATGATATCTTACGGCTTGGGACGACGCATAATCCTAAATTCGAAAACCTTATGAATCAACAACCTTCATCGGACGATGTTAATCTTATGCATAATCCAACCTCCTTCTTCCTATCAGATGCTGCTCAAGGCAGCTTCCAAAACAACAAGCCGCTGAATCCTCTTATGCAACTTCATCATGATCATCATCATCTTCATAGCAACAATAATGCAAGCAATATTACCTCTCCCAACTCATCTAGTACTCCTAATAATAATCTCTTCAACCACGGAAACAGCTTCTTCTTCAACTACAATGCCAATACTAGTACTACTACAGGAGATTTTGACATGAACGGGAATAATGGTGGGAACCAATTAAACTTCCCATCTAACATGAGTGGTAGTAGCATTCATTCTGATCATAACCTAATTTCCACAGCTGGTACTATGTCTTCTCTCTACGGACACGATCATCATCATCATCATCAGCCAGTGCAACCGAAGAATATTAACTCGGCCCACATGTCCGCTACGGCATTACTTCAAAAGGCTGCTGAAATGGGTTCAACTACAAGCACCAATAATAGTACCACTTCTTCGTCTTTGCTAAAGGGCCTTCATGGTAGTTCCATAAATAATGCGAAGTCCGACCGACAACTTCTGAATGACGTTTTCGGTAACGACGGTACGGTGCTAGAAAACGAGAGCATCCAGCTTCAAGGATTAATGAAGTCTCTAGCCAATTATAGTTCTTCCATATACGGAAGCAGTAGTACTAATATTACTCATGATCATGATCATCAGAATGGACAGGAGAATTACATGAATCAGAAAACGTTTGGGGAGTATAGTAATTTTGGAAACATGCAGCAGGCTCATCATGATCAGGCGAGTAAGTTGCATCAAAATCTGGCTCGGTCTGACAAGTTAACGTTGGATTTTCTAGGTGTGGGTGGGTTTGTAAGAAACATGCAGGGTGGTGGGTATAATTCACAGACTAGATCAGACCAGCAGCAGCAACATCATAGTACTCTTCAAGCAGGGACCTCTTTGGATCCGGCCGGGCTGAAATCAGGGCAGACAGGTCAACATTTTGGAGGCGCACTACATTGA | 1644 | 44.59 | MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDQSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPSLISSMGSNLYGTSHTSLDLSQVSPHLSTVLQNHPLPNSGHHDILRLGTTHNPKFENLMNQQPSSDDVNLMHNPTSFFLSDAAQGSFQNNKPLNPLMQLHHDHHHLHSNNNASNITSPNSSSTPNNNLFNHGNSFFFNYNANTSTTTGDFDMNGNNGGNQLNFPSNMSGSSIHSDHNLISTAGTMSSLYGHDHHHHHQPVQPKNINSAHMSATALLQKAAEMGSTTSTNNSTTSSSLLKGLHGSSINNAKSDRQLLNDVFGNDGTVLENESIQLQGLMKSLANYSSSIYGSSSTNITHDHDHQNGQENYMNQKTFGEYSNFGNMQQAHHDQASKLHQNLARSDKLTLDFLGVGGFVRNMQGGGYNSQTRSDQQQQHHSTLQAGTSLDPAGLKSGQTGQHFGGALH | 547 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6757015 | 6760638 | + | Conep13aG0070300.1 | Cone13ag0679 | 451066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0679 | 547 | Pfam | Zinc-finger of C2H2 type | 6 | 28 | IPR013087 | - | |
Cone13ag0679 | 547 | MobiDBLite | consensus disorder prediction | 503 | 547 | - | - | |
Cone13ag0679 | 547 | FunFam | Zinc finger protein MAGPIE | 2 | 29 | - | - | |
Cone13ag0679 | 547 | SMART | c2h2final6 | 47 | 77 | IPR013087 | - | |
Cone13ag0679 | 547 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
Cone13ag0679 | 547 | SMART | c2h2final6 | 82 | 102 | IPR013087 | - | |
Cone13ag0679 | 547 | Gene3D | Classic Zinc Finger | 6 | 45 | - | - | |
Cone13ag0679 | 547 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 60 | 139 | - | - | |
Cone13ag0679 | 547 | MobiDBLite | consensus disorder prediction | 503 | 534 | - | - | |
Cone13ag0679 | 547 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 28 | IPR013087 | - | |
Cone13ag0679 | 547 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 102 | IPR036236 | - | |
Cone13ag0679 | 547 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 512 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cone13ag0679 | 547 | Gene3D | Classic Zinc Finger | 46 | 130 | - | - | |
Cone13ag0679 | 547 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
Cone13ag0679 | 547 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 108 | 147 | - | - | |
Cone13ag0679 | 547 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 81 | 105 | - | - | |
Cone13ag0679 | 547 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 43 | 77 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0679 | Cone-Chr13:6757015 | Cone19ag0670 | Cone-Chr19:5703595 | 2.01E-123 | dispersed | |
Cone13ag0679 | Cone-Chr13:6757015 | Cone13ag0680 | Cone-Chr13:6762851 | 6.02E-119 | tandem | |
Cone13ag0679 | Cone-Chr13:6757015 | Cone19ag0669 | Cone-Chr19:5696424 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44624 | PF05116 | S6PP | 2.10E-98 | CL0137 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0679 | K25870 | - | mdm:103403455 | 475.707 |