Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0680 ATGGCTGCATCTTCATCAGCAGGGTTTATGGGAATTAGAGAAGAAGATGAAGACGAGATGATGATGATGCAATTACAACAACATTCTTCTACATCAAATACTTCTGCCGCTCCAATTACGACGGCTCCTCCGCTGCCTAAGAAGAAGAGAAATCAACCTGGAACTCCAAATGCGGAGGTGATAGCGCTATCGCCCAAAACACTGATGGCAACAAACAGGTTCATATGTGAAGTATGCAACAAAGGGTTCCAGAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTCCCTTGGAAGCTTAAGCAGAAGACAAACAAAGAGCCCAAGCGCAAAGTCTATCTCTGCCCCGAGTCCACTTGCATCCACCACGACCCCTCTCGGGCTCTCGGCGACCTCACGGGAATAAAAAAGCACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAATGCTCAAAGAGATATGCTGTTCAGTCTGATTGGAAGGCTCATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGATTGTGGTACTCTCTTCTCTAGGCGTGACAGTTTCATCACCCATAGGGCCTTCTGTGATGCACTGGCTCAAGAAAGTGCAAGAAACCCTCCGATTGGAAGCCACCTTTTTGGAGGTAACAATGTTGGTTTGGGATTATCTCAAGTTGCTCCTCAAGTTTCCTCAATGCAAGGTCATCAAAGCACTCAATCCGGTACTGACGTTCCACGACTTGGTACTACTGGCCTGTCCGGCCAATTCCACCACCTTTTCCCGCCACCACTCGGCTCATCTTTATTCCGACCACCTCAACCGCCGGGCAATCTGACATCGTCAAATTTCTTCTTAGGCAAAACAAACCAAACCAATTACAATGATGATGAAACCGGTCAATCCTCCCACCCGGCTGGAAACAGTTTGTTGCCTAACAAGTCATTTCATGGTCTGATGCAACTTTCTCATGATCATCACCTCCAAGCTGCCAACACATCTTGTTCTAATCCTCCATCCATGTTCAACCTAAGCTTCATGTCCAATGCAACAACTCATGATCATGGCAATAATAGCAACAACAATGATCATAGCCCGCGGTCTTCCGGTATGATAGTTTCCAGTCAATTCAACAGTGGAGCGAACGGAAATGGGGGTAATAATGACGGATCAAACATTTTCGGAGCGAACAACATGATGGTTGGGGATCAGATAAGCTCGGGGGCAGTTCCATCTCTCTATAGCACTTCTATTCAAAATAGCAATGCTAACACTCTCCCTCACATGTCTGCTACTGCACTACTTCAAAAGGCCGCTCAACTAGGATCAACCACTTCAACAAACAACAATGCGCCATTTCTTCGTAATTTTGGAGGCTCGTCGTCAACCGGCTCCAAATCCAACATGATGTACCCTAATCCAACGGCTGATAACTTCGAGAACATTTACGGGGAAAATGATCAGAACCATCTTCAAGACCTACTGAATTACTCCTTGATCAATAGTGGAAACTCGAGTAGTAGTCTCTTCGGAAGTGGGTCCGGGTCCGGAGGGATCAATACTTTCTTCAGTGGGAATGATGGGAATAGGTCAAGCATTGATCAGAACCTGGAGGAGCCAAAGCTGAGACAAACCCTTCCAGCTGGGAGCAGTAATAGTAGTATTGGAGGGTCAGATAGATTGACAAGGGACTTTCTAGGAGTTGGGGAGATAGTAAGAAGTATAAGTGGAGGGTTTTCTCCAAGGGAGCAAAGTCAAACCCAACGTCAAAGGCTACAACAACAACATGAACAGCATCGACAACAACATGGGATTGATCAAATGGCTGGATCGTTGGATGAAGATGGCAGTGCGGCGGCAGCGCAGTCAAGCCAGTCATATGGAGGTGGCGGTGGAAATTTCCATTAG 1914 46.76 MAASSSAGFMGIREEDEDEMMMMQLQQHSSTSNTSAAPITTAPPLPKKKRNQPGTPNAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPESTCIHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPPIGSHLFGGNNVGLGLSQVAPQVSSMQGHQSTQSGTDVPRLGTTGLSGQFHHLFPPPLGSSLFRPPQPPGNLTSSNFFLGKTNQTNYNDDETGQSSHPAGNSLLPNKSFHGLMQLSHDHHLQAANTSCSNPPSMFNLSFMSNATTHDHGNNSNNNDHSPRSSGMIVSSQFNSGANGNGGNNDGSNIFGANNMMVGDQISSGAVPSLYSTSIQNSNANTLPHMSATALLQKAAQLGSTTSTNNNAPFLRNFGGSSSTGSKSNMMYPNPTADNFENIYGENDQNHLQDLLNYSLINSGNSSSSLFGSGSGSGGINTFFSGNDGNRSSIDQNLEEPKLRQTLPAGSSNSSIGGSDRLTRDFLGVGEIVRSISGGFSPREQSQTQRQRLQQQHEQHRQQHGIDQMAGSLDEDGSAAAAQSSQSYGGGGGNFH 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6762851 6767892 - Conep13aG0070400.1 Cone13ag0680 451067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0680 637 Gene3D Classic Zinc Finger 128 207 - -
Cone13ag0680 637 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 111 145 - -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 275 312 - -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 543 562 - -
Cone13ag0680 637 Gene3D Classic Zinc Finger 56 125 - -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 619 637 - -
Cone13ag0680 637 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 233 312 - -
Cone13ag0680 637 FunFam protein indeterminate-domain 12-like 53 121 - -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 24 40 - -
Cone13ag0680 637 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 578 637 - -
Cone13ag0680 637 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 149 173 - -
Cone13ag0680 637 Pfam Zinc-finger of C2H2 type 74 96 IPR013087 -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 348 391 - -
Cone13ag0680 637 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 176 209 - -
Cone13ag0680 637 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Cone13ag0680 637 Coils Coil 584 604 - -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 233 252 - -
Cone13ag0680 637 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 580 594 - -
Cone13ag0680 637 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 590 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone13ag0680 637 MobiDBLite consensus disorder prediction 543 561 - -
Cone13ag0680 637 MobiDBLite consensus disorder prediction 24 57 - -
Cone13ag0680 637 SMART c2h2final6 115 145 IPR013087 -
Cone13ag0680 637 SMART c2h2final6 74 96 IPR013087 -
Cone13ag0680 637 SMART c2h2final6 150 170 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0680 Cone-Chr13:6762851 Cone19ag0670 Cone-Chr19:5703595 0 dispersed
Cone13ag0679 Cone-Chr13:6757015 Cone13ag0680 Cone-Chr13:6762851 6.02E-119 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44625 PF13920 zf-C3HC4_3 5.40E-07 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0680 K25870 - rcu:8283306 605.134