Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0695 ATGGCGTTTGCAGCAGGTCAACATCATTCTTCTAGCGGGACTAATACAGAATCTTCTAATGATGAGTTGTACAAGGAATTATGGCATGCCTGTGCAGGACCACTTGTTACCCTTCCTCGTCAAGGGGAGAGGGTATATTACTTTCCGCAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGGTCAGATCAAAAGATGCCATCATTTAATCTTCCATCAAAAATACTTTGTACAGTTGTTAATGTCCAGCTTCGGGCCGAACCTGAAACAGATGAAGTCTACGCACAGATAACTCTCCTTCCTGTAGATCAAGGTGAAGTAACAAGCCCAGATCCACCTCTCCCTGAGCCTCCAAGGTGCAATGTCCATTCATTTTGCAAGACACTTACGGCTTCCGACACTAGCACCCATGGAGGCTTCTCTGTCCTTCGGAGGCATGCAGATGATTGTCTGCCACCATTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATAAAACTGAATGGCATTTTCGGCACATTTTTCGAGGCCAACCTAGGCGCCATTTACTAACAACAGGATGGAGTGTCTTTGTTAGTTCCAAAAAATTGGTAGCTGGCGATGCTTTTATATTTCTAAGAGGTGAGAATGGAGAGCTCCGTGTTGGGGTGAGGCGACTCATGCGACAACTTAACAATATGCCCTCTTCTGTAATATCAAGTCACAGTATGCATCTTGGGGTTCTGGCTACTGCATCTCATGCCATTTCAGCGGGAACATTCTTTTCTGTATTTTACAAGCCAAGAACAAGTAGGTCTGAGTTCATTGTAAGTCTAAACAAATACCTTGAAGCTCGAAATCATAAACTCTCTGTCGGAATGAGGTTCAAGATGAGATTCGAGGCCGAGGAAGTTCCTGAAAGAAGGTTCAGTGGTACCATTGTTGGTGTTGGAGATAATCCCTCATCTGGATGGGCTGATTCCGAGTGGAGATCATTAAAGGTTCAATGGGATGAACCTTCATCTATTTTACGGCCAGATAGAGTTTCGCCTTGGGAATTGGAGACACTTGTTGGAACTAATCCTCCAGTCTCCCAACCTACTCAAAGGAGCAAGCGTTCACGGCCAACCATTTTACCTATGCCACCACAAGATATACCCGTTCTCAGTGGATGGAAAACCACAGAATCTCCTGTCTTTTCATACTCTGACTTGCAACGTGGAAAAGACTTTTATCCATTATCTGCCACAACAACAAACACCCTCGGATTTAATGGGAATGGCTCTTTTTCAATGGTTTCCAACAATTCTTATTGGCCTAATCGGGTGGAAACTGTAACAGATTCTTTTTCCCCTGTCGCAAACAAAGAATCTGGTGAAAGGAAACAGTGCCCTGGCAGTGGCTGCAGGTTGTTTGGGATCCAGCTGCTTGGAAGCTCTAATGCAGAGGGGACTTCACCAATTACAGTGTCTAGAAATGTGGGAGATGATCAACTGATTCTATCTTTAGAGACTGAATTAGATCAGCATTCTGAACCATCAAATGTCAACCGATGTGATATTCCCTCAGTTAGCTGTGATGCTGAGAAATCAAGCTTGAGATCTCCTCAGGAGTCTCAAAGTAGGCAAATTCGTAGCTGCACAAAGGTTCACATGGAAGGGATTGCCGTGGGAAGGGCTGTAGATTTGACCAGGTTTGATCGCTACGAAGATCTGCTGTGGAAGCTGGAGGAGATGTTTGACATTGAGGGTGAGCTCTGTGGAACTACAAAGAAATGGCAGGTTGTCTATACTGATGATGAGGATGACATGATGTTGGTTGGGGATGACCCATGGAATGAGTTCTGCAGCATGGTGAGGAAGATATTCATCTACACGACAGAGCAAGCAAAGAGACTTTCACCTAAGATAAAACTCCCAGTAAGAGAAGACGGCATGCTCAATAAACCAGATTCCGAAGCAGCCATCAACACTGAGGACCAGTCATCCATCGTGGGATCTGGATACTGA 2013 45.01 MAFAAGQHHSSSGTNTESSNDELYKELWHACAGPLVTLPRQGERVYYFPQGHMEQLEASMHQGSDQKMPSFNLPSKILCTVVNVQLRAEPETDEVYAQITLLPVDQGEVTSPDPPLPEPPRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHKTEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAISAGTFFSVFYKPRTSRSEFIVSLNKYLEARNHKLSVGMRFKMRFEAEEVPERRFSGTIVGVGDNPSSGWADSEWRSLKVQWDEPSSILRPDRVSPWELETLVGTNPPVSQPTQRSKRSRPTILPMPPQDIPVLSGWKTTESPVFSYSDLQRGKDFYPLSATTTNTLGFNGNGSFSMVSNNSYWPNRVETVTDSFSPVANKESGERKQCPGSGCRLFGIQLLGSSNAEGTSPITVSRNVGDDQLILSLETELDQHSEPSNVNRCDIPSVSCDAEKSSLRSPQESQSRQIRSCTKVHMEGIAVGRAVDLTRFDRYEDLLWKLEEMFDIEGELCGTTKKWQVVYTDDEDDMMLVGDDPWNEFCSMVRKIFIYTTEQAKRLSPKIKLPVREDGMLNKPDSEAAINTEDQSSIVGSGY 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6850298 6856380 - Conep13aG0071900.1 Cone13ag0695 451082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0695 670 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677(InterPro)
Cone13ag0695 670 SUPERFAMILY DNA-binding pseudobarrel domain 116 256 IPR015300 -
Cone13ag0695 670 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Cone13ag0695 670 Gene3D - 541 635 - -
Cone13ag0695 670 Gene3D - 124 229 IPR015300 -
Cone13ag0695 670 MobiDBLite consensus disorder prediction 360 376 - -
Cone13ag0695 670 MobiDBLite consensus disorder prediction 358 386 - -
Cone13ag0695 670 SUPERFAMILY CAD & PB1 domains 548 623 - -
Cone13ag0695 670 CDD B3_DNA 125 227 IPR003340 GO:0003677(InterPro)
Cone13ag0695 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 636 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone13ag0695 670 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone13ag0695 670 FunFam Auxin response factor 290 362 - -
Cone13ag0695 670 Pfam AUX/IAA family 538 582 IPR033389 -
Cone13ag0695 670 Pfam AUX/IAA family 593 637 IPR033389 -
Cone13ag0695 670 ProSiteProfiles PB1 domain profile. 546 630 IPR053793 -
Cone13ag0695 670 FunFam Auxin response factor 541 635 - -
Cone13ag0695 670 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Cone13ag0695 670 Gene3D - 290 361 - -
Cone13ag0695 670 FunFam Auxin response factor 125 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0695 Cone-Chr13:6850298 Cone19ag0242 Cone-Chr19:1587389 3.07E-198 dispersed
Cone11ag0871 Cone-Chr11:7212441 Cone13ag0695 Cone-Chr13:6850298 6.04E-138 transposed
Cone13ag0695 Cone-Chr13:6850298 Cone19ag0688 Cone-Chr19:5790271 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44626 PF10237 N6-adenineMlase 2.20E-51 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0695 K14486 - mdm:103441991 1058.13