Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0701 ATGGAAGCGATGCCGCACCCAATACCTCGAACCGTAGAGGAGGTTTTCAGCGACTTCAAAGGCCGCCGTGCCGGTTTAATCAAGGCCCTTACCGCCGATGTTGAAAAGTTTTACCAGCAATGCGATCCTGATAAGGAGAATTTGTGTCTTTATGGACTTCCAAATGAGACATGGGAAGTTAACCTGCCTGTTGAGGAGGTGCCGCCTGAGCTGCCCGAGCCAGCATTAGGCATAAACTTTGCTAGGGATGGGATGCAGGAGAAGGATTGGTTATCTTTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCCTTCTATTTTGGGGCCCGGTTTGGGTTCGGTAAGAACGAAAGGAAGAGGCTTTTCCAGATGATAAATGATTTCCCAACTATATTCGAAGTTGTGACTGGAGCTAGTAAACCGCCAAAAGAGTTGTCTGCTACTCATAACAACAGCAGCAAAAGCAAACTGTGTGGAAAAATGTCACGTCAATCTGAGGCCCACACTAAAGAAGTGAAGATGTCCCCACCAAACAAACAAGAGGATGATAGTGGAGAAGAAGAGGAAGATGATGATCAAGGTGCAACATGTGGGGCCTGTGGTGATAACTACGGAACGGATGAGTTTTGGATTTGTTGTGATATTTGTGAAAGATGGTTCCATGGTAAGTGCGTGAAGATCACGCCTGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCAAGTTGCAGTAGTAGCAAGAGGGCTAGAGCATAA 762 46.46 MEAMPHPIPRTVEEVFSDFKGRRAGLIKALTADVEKFYQQCDPDKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDFPTIFEVVTGASKPPKELSATHNNSSKSKLCGKMSRQSEAHTKEVKMSPPNKQEDDSGEEEEDDDQGATCGACGDNYGTDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSSSKRARA 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6892579 6895600 - Conep13aG0072500.1 Cone13ag0701 451088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0701 253 CDD PHD_AL_plant 199 246 IPR044104 -
Cone13ag0701 253 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Cone13ag0701 253 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Cone13ag0701 253 MobiDBLite consensus disorder prediction 168 183 - -
Cone13ag0701 253 FunFam PHD finger alfin-like protein 191 247 - -
Cone13ag0701 253 Pfam PHD-finger 199 245 IPR019787 -
Cone13ag0701 253 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone13ag0701 253 SMART PHD_3 198 246 IPR001965 -
Cone13ag0701 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Cone13ag0701 253 MobiDBLite consensus disorder prediction 168 196 - -
Cone13ag0701 253 PANTHER CPG BINDING PROTEIN 9 252 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone13ag0701 253 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0852 Cone-Chr10:4367590 Cone13ag0701 Cone-Chr13:6892579 7.33E-151 dispersed
Cone13ag0701 Cone-Chr13:6892579 Cone3ag0883 Cone-Chr3:4532881 4.63E-154 dispersed
Cone13ag0701 Cone-Chr13:6892579 Cone19ag0696 Cone-Chr19:5833670 2.58E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44627 PF05470 eIF-3c_N 2.80E-244 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0701 K26274 - csv:101212601 446.432