Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0722 ATGTCGTCTGTGATAATACCTCCGGTCCTTTCTTCGCCCCGAGATGACGCTGCTCAACTTTACCGTGCCTTTAAAGGTTTCGGGTGTAACACGGAAGCGGTAATCAACATTCTTGCCCACCGGAATGCAGCACAGCGTTCTCTCATTCAGCAAGAATATCGGGCCATGTACTCTGAAGAACTTGGTAAACGTTTAACGTCCGAGCTAAGAGGCCAGCTTGAGAAAGCAATTCTACTCTGGATCCATGATCCGCCAACAAGGGATGCTACTGTACTGAGGAAGGCTTTGAGTGGAGACTTCGATCTTAAAGCTGCTACTGAAGTGATATGTTCACGTACTCCATCGCAGATACAACATTTCAAACAAATTTATTTAACAATTTTCCGTTCCTACCTTGAGCATGATATTGAAGCTTGTGCATCTGGAGATCATAAAAAGTTACTGCTCACTTATGTGGGAAGACCACGATATGAAGGCCCTGAAGTTGATCGTGCAATTGTAGAAGCAGATGCTAAAGCTCTCTACAAAGCTGGAGAGAAGAGAATTGGAACCGATGAGAACGCTTTTATATTTATTTTCTGTGAAAGAAGTAGTGCCCACCTCAATGCTGTTAGCTCTGCTTATCACCATATGTATGGAAACTCGCTCAAAAAGGCTATAAAGAAAGAAACATCCGGGCAATTTGAGTATGCCCTTGTTACTATTTTACAATGTGCCGAGAATCCAGCCCGGTATTTTTCAAAGCTATGA 750 43.2 MSSVIIPPVLSSPRDDAAQLYRAFKGFGCNTEAVINILAHRNAAQRSLIQQEYRAMYSEELGKRLTSELRGQLEKAILLWIHDPPTRDATVLRKALSGDFDLKAATEVICSRTPSQIQHFKQIYLTIFRSYLEHDIEACASGDHKKLLLTYVGRPRYEGPEVDRAIVEADAKALYKAGEKRIGTDENAFIFIFCERSSAHLNAVSSAYHHMYGNSLKKAIKKETSGQFEYALVTILQCAENPARYFSKL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6983831 6986087 + Conep13aG0074600.1 Cone13ag0722 451109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0722 249 Gene3D Annexin 1 82 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 ProSiteProfiles Annexin repeat profile. 165 237 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 Gene3D Annexin 83 152 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 PANTHER ANNEXIN 12 248 - GO:0005509(PANTHER)|GO:0005737(PANTHER)
Cone13ag0722 249 SUPERFAMILY Annexin 2 248 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 Gene3D Annexin 156 241 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 FunFam Annexin 1 82 - -
Cone13ag0722 249 ProSiteProfiles Annexin repeat profile. 83 153 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 PRINTS Annexin family signature 174 200 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 ProSitePatterns Annexin repeat signature. 183 235 IPR018252 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 SMART annex3 183 235 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 SMART annex3 99 151 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 SMART annex3 28 80 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 FunFam Annexin 156 241 - -
Cone13ag0722 249 Pfam Annexin 170 235 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 Pfam Annexin 16 79 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone13ag0722 249 Pfam Annexin 87 150 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0722 K17098 - - csv:101209769 362.073
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0722 Cone-Chr13:6983831 Cone19ag0721 Cone-Chr19:5965035 5.18E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g546 . . . . . . . Bma15g00014 . . . . . . . . . . . . . . . . Cla05g02669 Cam05g2866 Cec05g2903 Cco05g2935 Clacu05g2870 Cmu05g2716 Cre05g2833 Cone13ag0722 Cone19ag0721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003010 1 2 1 1 0 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 3 2 1 53