Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone13ag0728 | ATGTCGTCGCAATCCTCTCCTACTTCCACGGCGGCGTCTGACCAACAAGCTCCGCTCCTCCGCCCCCGCCAATCCTCCGACGATGATGGCCCTAGCTCCTCGGCTCCTCCCGCCACCCTTGCACTCCTCCTGGGCCGGGCCTCAGGACGCCGCGGCCCTTCCATCTTGGTCCGAGAAACAGCGGCGCGGCAGCTGGAGGAGAGGCGAGCGGACTGGGCATACTCTAAGCCGGTGGTGGCGCTCGACGTGATGTGGAATACAGCTTTCGTCGTCGTTTCGATCGCTATGCTTATTTCCACGGTTAATGAGCAGCCTGACACACCGATTCGGCTCTGGATCTGTGGCTATGCGTTACAGTGCTTGGTCCACGTGGTGCTCGTCTGGATTGAGTACAGGAGGAGGAGCGTGAGGAGGGCTAGGGATTTGGAGGGCCAGCAGCAAGGTGGAGATGATAATGGCGGTGCTGTAGCTGCTGCTTCTAATGAAAGTGAGGATGAGGATGTGAACTCAAGGGGTTTGTCTATTTCGAGCCAGTCCAGCATTACTAAACGATGCGAGTCCATAAACACAATTGCATCGTTTCTCTGGTGGATAGTCGGCTTTTACTGGGTAGTCTCAGGCGGAGATAGCTTTATGATTAACGCTCCTCGTTTATACTGGTTGGCTGTAATCTTTCTAGCATTTGATGTATTCTTTGCATTATTCTGCGTCGTTTTGGCATGTCTAATCGGGATCGCTCTCTGTTGCTGCTTGCCTTGCATCATTGCCCTTCTATATGCTGTTGCTGGTCAGGAAGGTGCATCAGAAGCAGATCTAGGTGCCCTGCCCAAATATAGATTCAAGGCTTCTAACAACGAGGAGAAGCCTAGTGTGGGGGCAGGGTTTATGATTCCTGTTGAAACGAGCAGTGGGTACTTGTTAACCGAACGAGTACTTCTAAACGAGGATGCAGAGTGCTGTATCTGTCTGAGCTCATACGAAGATGGAGCAGAACTCCATGCTCTTCCCTGCAACCATCACTTCCATTCTTCCTGTATTGTTAAATGGCTCAAGATGAATGCCACGTGTCCTCTCTGCAAGTATAATATTCTCAAGGGATCCGTTTAG | 1107 | 52.03 | MSSQSSPTSTAASDQQAPLLRPRQSSDDDGPSSSAPPATLALLLGRASGRRGPSILVRETAARQLEERRADWAYSKPVVALDVMWNTAFVVVSIAMLISTVNEQPDTPIRLWICGYALQCLVHVVLVWIEYRRRSVRRARDLEGQQQGGDDNGGAVAAASNESEDEDVNSRGLSISSQSSITKRCESINTIASFLWWIVGFYWVVSGGDSFMINAPRLYWLAVIFLAFDVFFALFCVVLACLIGIALCCCLPCIIALLYAVAGQEGASEADLGALPKYRFKASNNEEKPSVGAGFMIPVETSSGYLLTERVLLNEDAECCICLSSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGSV | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7016575 | 7018678 | - | Conep13aG0075200.1 | Cone13ag0728 | 451115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone13ag0728 | 368 | FunFam | E3 ubiquitin protein ligase RIE1 | 299 | 367 | - | - | |
| Cone13ag0728 | 368 | Pfam | Ring finger domain | 318 | 360 | IPR001841 | - | |
| Cone13ag0728 | 368 | CDD | RING-H2_PA-TM-RING | 318 | 360 | - | - | |
| Cone13ag0728 | 368 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Cone13ag0728 | 368 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Cone13ag0728 | 368 | SUPERFAMILY | RING/U-box | 307 | 364 | - | - | |
| Cone13ag0728 | 368 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 299 | 366 | IPR013083 | - | |
| Cone13ag0728 | 368 | PANTHER | TARGET OF ERK KINASE MPK-1 | 43 | 363 | - | GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
| Cone13ag0728 | 368 | SMART | ring_2 | 319 | 359 | IPR001841 | - | |
| Cone13ag0728 | 368 | ProSiteProfiles | Zinc finger RING-type profile. | 319 | 360 | IPR001841 | - | |
| Cone13ag0728 | 368 | MobiDBLite | consensus disorder prediction | 142 | 171 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag0429 | Cone-Chr13:3924821 | Cone13ag0728 | Cone-Chr13:7016575 | 3.62E-90 | dispersed | |
| Cone13ag0728 | Cone-Chr13:7016575 | Cone6ag0756 | Cone-Chr6:3844159 | 4.06E-115 | dispersed | |
| Cone13ag0728 | Cone-Chr13:7016575 | Cone19ag0731 | Cone-Chr19:6018946 | 1.93E-211 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone13ag0728 | - | - | - | 0.0 |