Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0728 ATGTCGTCGCAATCCTCTCCTACTTCCACGGCGGCGTCTGACCAACAAGCTCCGCTCCTCCGCCCCCGCCAATCCTCCGACGATGATGGCCCTAGCTCCTCGGCTCCTCCCGCCACCCTTGCACTCCTCCTGGGCCGGGCCTCAGGACGCCGCGGCCCTTCCATCTTGGTCCGAGAAACAGCGGCGCGGCAGCTGGAGGAGAGGCGAGCGGACTGGGCATACTCTAAGCCGGTGGTGGCGCTCGACGTGATGTGGAATACAGCTTTCGTCGTCGTTTCGATCGCTATGCTTATTTCCACGGTTAATGAGCAGCCTGACACACCGATTCGGCTCTGGATCTGTGGCTATGCGTTACAGTGCTTGGTCCACGTGGTGCTCGTCTGGATTGAGTACAGGAGGAGGAGCGTGAGGAGGGCTAGGGATTTGGAGGGCCAGCAGCAAGGTGGAGATGATAATGGCGGTGCTGTAGCTGCTGCTTCTAATGAAAGTGAGGATGAGGATGTGAACTCAAGGGGTTTGTCTATTTCGAGCCAGTCCAGCATTACTAAACGATGCGAGTCCATAAACACAATTGCATCGTTTCTCTGGTGGATAGTCGGCTTTTACTGGGTAGTCTCAGGCGGAGATAGCTTTATGATTAACGCTCCTCGTTTATACTGGTTGGCTGTAATCTTTCTAGCATTTGATGTATTCTTTGCATTATTCTGCGTCGTTTTGGCATGTCTAATCGGGATCGCTCTCTGTTGCTGCTTGCCTTGCATCATTGCCCTTCTATATGCTGTTGCTGGTCAGGAAGGTGCATCAGAAGCAGATCTAGGTGCCCTGCCCAAATATAGATTCAAGGCTTCTAACAACGAGGAGAAGCCTAGTGTGGGGGCAGGGTTTATGATTCCTGTTGAAACGAGCAGTGGGTACTTGTTAACCGAACGAGTACTTCTAAACGAGGATGCAGAGTGCTGTATCTGTCTGAGCTCATACGAAGATGGAGCAGAACTCCATGCTCTTCCCTGCAACCATCACTTCCATTCTTCCTGTATTGTTAAATGGCTCAAGATGAATGCCACGTGTCCTCTCTGCAAGTATAATATTCTCAAGGGATCCGTTTAG 1107 52.03 MSSQSSPTSTAASDQQAPLLRPRQSSDDDGPSSSAPPATLALLLGRASGRRGPSILVRETAARQLEERRADWAYSKPVVALDVMWNTAFVVVSIAMLISTVNEQPDTPIRLWICGYALQCLVHVVLVWIEYRRRSVRRARDLEGQQQGGDDNGGAVAAASNESEDEDVNSRGLSISSQSSITKRCESINTIASFLWWIVGFYWVVSGGDSFMINAPRLYWLAVIFLAFDVFFALFCVVLACLIGIALCCCLPCIIALLYAVAGQEGASEADLGALPKYRFKASNNEEKPSVGAGFMIPVETSSGYLLTERVLLNEDAECCICLSSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGSV 368
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 7016575 7018678 - Conep13aG0075200.1 Cone13ag0728 451115
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0728 368 FunFam E3 ubiquitin protein ligase RIE1 299 367 - -
Cone13ag0728 368 Pfam Ring finger domain 318 360 IPR001841 -
Cone13ag0728 368 CDD RING-H2_PA-TM-RING 318 360 - -
Cone13ag0728 368 MobiDBLite consensus disorder prediction 1 36 - -
Cone13ag0728 368 MobiDBLite consensus disorder prediction 1 33 - -
Cone13ag0728 368 SUPERFAMILY RING/U-box 307 364 - -
Cone13ag0728 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 366 IPR013083 -
Cone13ag0728 368 PANTHER TARGET OF ERK KINASE MPK-1 43 363 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone13ag0728 368 SMART ring_2 319 359 IPR001841 -
Cone13ag0728 368 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Cone13ag0728 368 MobiDBLite consensus disorder prediction 142 171 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0429 Cone-Chr13:3924821 Cone13ag0728 Cone-Chr13:7016575 3.62E-90 dispersed
Cone13ag0728 Cone-Chr13:7016575 Cone6ag0756 Cone-Chr6:3844159 4.06E-115 dispersed
Cone13ag0728 Cone-Chr13:7016575 Cone19ag0731 Cone-Chr19:6018946 1.93E-211 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0728 - - - 0.0