Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0734 ATGGCCACTATGCAGAGGATTGGTCAGTCGAGCGGAACTGTCAGTGCGGATAGTTATGGCTCCGCTAAATGCGGTTCTGAAGTGGTGGCTTCCGATCAATTTCCGGTTGGCTTACGGGTTCTTGTTGTGGACGATGACGCTACTTGCTTGAGGGTTTTGGATAAGATGCTCCGTCGCTGCCTTTATTCTGTTACCTCTTGCTCCCGGGCTACTGTTGCGTTGGACCTTCTGCGTGAGAGGAAAGGTGGTTTTGATGTCGTATTGAGTGATGTTCATATGCCTGATATGGATGGATTCAAACTCCTAGAGTATGTTGGGCTAGAAATGGACCTTCCTGTTATTATGATGTCTGCTGATGGGAGAACAAGCGCCGTTATGAAAGGGATCAGACATGGAGCTTGTGATTATTTGATTAAGCCCATACGTGAAGAAGAGCTCAAGAATATTTGGCAGCATGTAGTGAGAAAAAAGCGGACTGAAAATAAGGAGCCTGAAAATTCAGGCAGCTTGGGTGATTATGAACAGCCAAGACGAGGGAATGATGATTCCACTGAAAATGCTTCTTCTGGTAACGAAGGAACGGAAGGAATTCCAAGAGTTCAGAGAAAGAGGAGCAATGCCAAGGAAGACGATGGTGAATTGGAAAATGAAGACCCTTCATCGTCAAAGAAACCACGTGTAGTGTGGTCAGTGGAGCTGCATCAGCAATTCGTAAGCGCTGTGAACCAACTTGGGCTTGAAAAGGCTGTGCCGAAGAGAATTCTGGAATTGATGAATGTGCCTGGTTTGACAAGGGAGAATGTTGCAAGTCATCTGCAGAAGTTTCGGCTATATTTAAAGAGACTAAGTGGAGTTGCTCAGCAACAAAAGGTCATCTCCAATCCCTATTGTGGGACGATAGAACCCCATGTTAATGTTGGCCCCTTTGGAATCAGAACTTTGGCTCCCTCTGGCCAAATTCCTCCACAAACTCTTGCAGCCCTGCATGCTGAACTTTTAGGGCAGCCAAGTAACAACCTAATCGATCAGCCTGCACTTTTACAAGCATCCCTCCATGGACCCAATAATATCCTAGTTGGACAGGGTGTCTCATTCGGTCAGCCTTCAGTAAAACTCCTACCCAATATATCCAATCATTATCAACCATCCAACATGCCTTTTGAGGATGTTTCTTCGGGCAATAGAGTATGGCAACAATGCAATAACCTTGGTCCCATAGGATCCAACAGTATTGGAGGATTGAGTCCCCAGAATAGTAACATGCTACTAGGCGTCCTACAGCAGCAGCCAAGAAATCAGCACTCTGTTGCATCTGAACCTAGCCATTCAATTAATGTGCAACCATCATGCTTAGTCATTCCCTCTCATCAATCATCTGCCAGTTTTCAGGCAGGAAGCAGTTCTGCCTCTGTTAATCAGAATTTAAGCTATAATAAGAGTTCCGTTATTGATTATACCCTTATCTCGCCTCAATCAAATAATTCCTTGTTAAATATTGGAGAAGTCTCGGGAGGGGATCTAAGAAATATGAATGTGCTCACTGGGTATATAGCTCCAAGGTCTATTTCTCCTTCTGCAGTAAATACTGGCAACAGCAATGGTCAGAAAGTTCAAAACTCAACCTTAACATTTACTGCAAGAAAATTTCCTGGGCCTGGTGTTAATATTCCAGATATCCAGGTTTCTTCGTATGGTTCAAGATCCGGTGAAGGGCTTGATCAGGGTCCTCTTAAAAATCTTGGTTTTGTTGGTAAAGGGACGATTATTCCAAGCCGGTATGCCGTGGATGAATTTGAAGCACCAATAAGCAACTTGGCTCATGATAATGCTAATAGGGTAAAACAAGAGCCGAGCATGGAATTTGTAGATAGTGCAAAGTGGGCATCCCATTGCTAA 1896 44.3 MATMQRIGQSSGTVSADSYGSAKCGSEVVASDQFPVGLRVLVVDDDATCLRVLDKMLRRCLYSVTSCSRATVALDLLRERKGGFDVVLSDVHMPDMDGFKLLEYVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPIREEELKNIWQHVVRKKRTENKEPENSGSLGDYEQPRRGNDDSTENASSGNEGTEGIPRVQRKRSNAKEDDGELENEDPSSSKKPRVVWSVELHQQFVSAVNQLGLEKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQKVISNPYCGTIEPHVNVGPFGIRTLAPSGQIPPQTLAALHAELLGQPSNNLIDQPALLQASLHGPNNILVGQGVSFGQPSVKLLPNISNHYQPSNMPFEDVSSGNRVWQQCNNLGPIGSNSIGGLSPQNSNMLLGVLQQQPRNQHSVASEPSHSINVQPSCLVIPSHQSSASFQAGSSSASVNQNLSYNKSSVIDYTLISPQSNNSLLNIGEVSGGDLRNMNVLTGYIAPRSISPSAVNTGNSNGQKVQNSTLTFTARKFPGPGVNIPDIQVSSYGSRSGEGLDQGPLKNLGFVGKGTIIPSRYAVDEFEAPISNLAHDNANRVKQEPSMEFVDSAKWASHC 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7048594 7052856 + Conep13aG0075800.1 Cone13ag0734 451121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0734 631 FunFam Two-component response regulator 220 283 - -
Cone13ag0734 631 SUPERFAMILY Homeodomain-like 222 281 IPR009057 -
Cone13ag0734 631 MobiDBLite consensus disorder prediction 158 225 - -
Cone13ag0734 631 NCBIfam myb-like DNA-binding domain, SHAQKYF class 224 277 IPR006447 GO:0003677(InterPro)
Cone13ag0734 631 CDD REC_typeB_ARR-like 40 154 - -
Cone13ag0734 631 ProSiteProfiles Response regulatory domain profile. 39 154 IPR001789 GO:0000160(InterPro)
Cone13ag0734 631 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 280 IPR017930 -
Cone13ag0734 631 Gene3D - 228 280 - -
Cone13ag0734 631 FunFam Two-component response regulator 38 175 - -
Cone13ag0734 631 SMART REC_2 38 150 IPR001789 GO:0000160(InterPro)
Cone13ag0734 631 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 395 IPR045279 GO:0009736(InterPro)
Cone13ag0734 631 MobiDBLite consensus disorder prediction 1 20 - -
Cone13ag0734 631 SUPERFAMILY CheY-like 37 163 IPR011006 -
Cone13ag0734 631 Pfam Myb-like DNA-binding domain 226 275 IPR001005 -
Cone13ag0734 631 Pfam Response regulator receiver domain 40 148 IPR001789 GO:0000160(InterPro)
Cone13ag0734 631 Gene3D - 38 227 - -
Cone13ag0734 631 MobiDBLite consensus disorder prediction 197 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0734 Cone-Chr13:7048594 Cone15ag0748 Cone-Chr15:4345184 5.85E-109 dispersed
Cone13ag0734 Cone-Chr13:7048594 Cone19ag0738 Cone-Chr19:6052160 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44629 PF13923 zf-C3HC4_2 2.50E-07 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0734 - - - 0.0