Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0738 ATGCATGCAGACGGTGACAAGGTTATCAGTTCCGATGAGAACGTTCTACAGAAACATGTTGCTTTCTTCGACAGAAACAAGGATGGCATCGTTTACCCTTGGGAGACTTTTCTAGGTTTTCGTGCAATCGGGTGCGGTATCTTCTTGTCAACAGCGAGTGCTTTCTTCATCAATTCTGCTCTCAGCCAAAAAACTCGCCCTGGAAAGTTCCCATCTCTACTATTTCCGATCGAGGTGAAGAATATCCACAAAGCCAAACACGGGAGTGACTCCGGTGTATATGATACAGAAGGAAGGTTTGTCGGTTCCAAGTTCGAAGAGATATTCAGCAAGCATAGTCAAACTCATCCCAATGCCTTGACCTCTAACGAGATAATGGAGATGCTAAAGGCAAACCGAAACCCTAAGGACTACAAAGGATGGGTTGCTAGCTGGACAGAATGGAAGATCCTTGACATGCTCTGCAAAGACAAGAATGGCTTACTCCATAAAGACACTATCAAGGCTGTTTATGATGGAAGCTTGTTTGAGCTCATGGAGAAGCAAACATCCTCATCTAAAAACAAAGCCTGTTAA 576 44.1 MHADGDKVISSDENVLQKHVAFFDRNKDGIVYPWETFLGFRAIGCGIFLSTASAFFINSALSQKTRPGKFPSLLFPIEVKNIHKAKHGSDSGVYDTEGRFVGSKFEEIFSKHSQTHPNALTSNEIMEMLKANRNPKDYKGWVASWTEWKILDMLCKDKNGLLHKDTIKAVYDGSLFELMEKQTSSSKNKAC 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7059187 7060892 - Conep13aG0076200.1 Cone13ag0738 451125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0738 191 Pfam Caleosin related protein 12 178 IPR007736 -
Cone13ag0738 191 SUPERFAMILY EF-hand 15 172 IPR011992 -
Cone13ag0738 191 PANTHER PEROXYGENASE 3-RELATED 8 186 IPR007736 GO:0004497(PANTHER)|GO:0005509(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0738 K17991 - - mdm:103430617 305.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0184 Cone-Chr15:876134 Cone13ag0738 Cone-Chr13:7059187 3.06E-59 transposed
Cone10ag0632 Cone-Chr10:3034771 Cone13ag0738 Cone-Chr13:7059187 1.34E-51 transposed
Cone13ag0738 Cone-Chr13:7059187 Cone19ag0743 Cone-Chr19:6064158 3.61E-123 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0738 . 5 189 Pollen Coat Proteome AT1G23240 58.4 2.5e-59 226.1
Cone19ag0743 . 26 200 Pollen Coat Proteome AT1G23240 59.4 4.7e-58 221.9
Cone13ag0738 . 5 189 Pollen Coat Proteome AT1G23240 58.4 2.5e-59 226.1
Cone19ag0743 . 26 200 Pollen Coat Proteome AT1G23240 59.4 4.7e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36