Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0741 ATGAAAAGAGAGCACCATCATCTCGATCCTCATACAGCTGCCGCCGGCAGTGGAATCAGTAAACAGAAGCTGTGGGAGATAGAGGCAGCGGCGCGGCGAGACGGCGGGATGGACGAGCTACTCGCCGTGTTGGGTTACAAAGTGAAGGCGTCGGACATGGCGGAAGTAGCTCAGAAACTAGAGCAGCTTGAAGAATTCATGGGGCATGTGCAAGAAGATGGATTAACTCAGCTCGTTACGGATACTGTTCATTACAATCCGTCCGATCTATCCACCTGGCTCGAAAGCATGCTCTCTGAGCTCAACGCGCCGCCTGATCTCAACCGTCTCATCGCCACCGCTCCTCCGCCTCAATCCACCGCGTCATCCTCGACAATAATCTCCATAGACTACTCGGACCAATCCGGCCTCGAACTCATCCCTGGAAATGCAATCTACAACAATCACAACCCCAATTATAACAATAAGCGATTGAAATTTCCTGATGATTCCGACCTGTTGTCTCCTCTTCCTGATTCTTCCGCTTCTCGTCCGGTAGTTCTCGTCGATTCGCAGGAGAACGGGATTCAGTTAGTCCACTCCCTGTTAGCTTGCGCTGAGGCGGTGCAGCAGAACAATCTCCACCTCGCAGAAGCGTTAGTGAAGCGGATCGGATTCTTAGCGATTACTCAGGACGGAGCTATGGGTAAGGTCGCGACCTTCTACGCGGAAGCGTTGGCGAGGAGGATTTACGGATTATTTCCCCAGAATCCACTGCTGGACAATTTCTCGATTCTTCAAATGCATTTCTACGAGAGCTGTCCGTATCTGAAATTCGCTCATTTCACGGCAAATCAAGCGATTCTCGAAGCGTTTGAAGGTAAGAATCGTGTTCATGTTATTGATTTCTCTATGAATCAGGGTATGCAGTGGCCGGCTTTGATGCAAGCTTTAGCCCTACGACCCGGAGGTCCGCCCGCTTTCCGGTTGACCGGAATCGGACCGCCGGCTCCGGATAACTCGGACCATTTGCAGGAGGTCGGGTGGAAGCTGGCTCAGTTAGCGGAGACGATTCACGTCGAGTTCGAGTACAGAGGGTTCGTGGCTAACAGCTTGGCCGATCTTGACGCGTCTATGCTTGAACTCAGACCAAGTGAGGTCGAATCGGTGGCGGTTAACTCGGTTTTCGAGCTTCATAAGCTGTTGGCTCGGCCGGGCGCGGTTGAGAAGGTTTTGTCCGTGGTGAAGAAGATGAAGCCGGATATCATGACAGTTGTTGAGCAAGAAGCTAACCACAACGGTCCGGTTTTCCTAGACCGGTTTACCGAGTCGCTTCACTACTACTCGACTCTGTTTGACTCGTTGGAGAGCTCGGTGAATAATCAGGACAAGGTCATGTCGGAGATGTATTTGGGTAAGCAGGTTTGCAACGTGGTGGCGTGCGAGGGTGTGGACCGGGTCGAACGGCACGAGACGCTGACTCAGTGGCGGAGTCGGCTTGACTCGTCAGGGTTTGTGCCGGTTCACCTCGGGTCCAACGCCTTTAAGCAGGCCAGTATGCTGTTGGCTTTGTTTGGGAGTGGGGATGGGTATAGAGTGGAAGAAAACGACGGGTGTTTGATGCTGGGTTGGCATACTCGGCCACTCATCGCCACCTCAGCCTGGCAACTCGGTGACCGACTGGCGGCTGCTTACTGA 1677 53.07 MKREHHHLDPHTAAAGSGISKQKLWEIEAAARRDGGMDELLAVLGYKVKASDMAEVAQKLEQLEEFMGHVQEDGLTQLVTDTVHYNPSDLSTWLESMLSELNAPPDLNRLIATAPPPQSTASSSTIISIDYSDQSGLELIPGNAIYNNHNPNYNNKRLKFPDDSDLLSPLPDSSASRPVVLVDSQENGIQLVHSLLACAEAVQQNNLHLAEALVKRIGFLAITQDGAMGKVATFYAEALARRIYGLFPQNPLLDNFSILQMHFYESCPYLKFAHFTANQAILEAFEGKNRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRPSEVESVAVNSVFELHKLLARPGAVEKVLSVVKKMKPDIMTVVEQEANHNGPVFLDRFTESLHYYSTLFDSLESSVNNQDKVMSEMYLGKQVCNVVACEGVDRVERHETLTQWRSRLDSSGFVPVHLGSNAFKQASMLLALFGSGDGYRVEENDGCLMLGWHTRPLIATSAWQLGDRLAAAY 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7068584 7070608 - Conep13aG0076500.1 Cone13ag0741 451128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0741 558 SMART DELLA_2 38 111 - -
Cone13ag0741 558 Pfam GRAS domain family 191 549 IPR005202 -
Cone13ag0741 558 Pfam Transcriptional regulator DELLA protein N terminal 38 105 IPR021914 -
Cone13ag0741 558 FunFam DELLA protein GAI 36 101 - -
Cone13ag0741 558 ProSiteProfiles GRAS family profile. 182 549 IPR005202 -
Cone13ag0741 558 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 169 548 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cone13ag0741 558 Gene3D - 36 101 IPR038088 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0741 Cone-Chr13:7068584 Cone4ag0701 Cone-Chr4:3628671 1.31E-155 dispersed
Cone8ag0799 Cone-Chr8:8031598 Cone13ag0741 Cone-Chr13:7068584 3.15E-21 dispersed
Cone13ag0741 Cone-Chr13:7068584 Cone16ag0528 Cone-Chr16:7324283 9.74E-216 wgd
Cone13ag0741 Cone-Chr13:7068584 Cone19ag0747 Cone-Chr19:6093751 0 wgd
Cone13ag0741 Cone-Chr13:7068584 Cone2ag0475 Cone-Chr2:2552787 5.97E-214 wgd
Cone13ag0741 Cone-Chr13:7068584 Cone6ag0390 Cone-Chr6:1896382 4.38E-264 wgd
Cone13ag0741 Cone-Chr13:7068584 Cone9ag0417 Cone-Chr9:1924848 1.37E-265 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44630 PF00293 NUDIX 3.10E-13 CL0261 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0741 K14494 - csv:101204164 788.104