Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0745 ATGTCAGCTGATGAGGCCAACAATCCTTCTTCAGCTCCTTCTCTCGAATCTCACGACCACTATCCAGAGATGATTACGGCGGCGATCGAAGCTCTCGACGGCAAGACCGACAAGTCGGCTATTTCGTACTACATCGAGATGAACTACACAGATCTACCAAATTCGCACTCAACTCTTGTCTCGCACCACCTCGATGTGATGAAGGAGAATGGCCAGTTCACCTTGGTTGATAGCAACTACGTGAAGGCGGATCTTAACGCGCCGGCGAAGAGAGGCCGTGGTCGTCCTCCGAAAGCTAAGGTTTCTTCTTCTCCTGCCGCAGCAGCAGGCATGGCCGGGCCGCCGCGGCCTCGTGGCCGTCCTCCCAAGCTGAGAGATCCTTTCGCGCCGGTTTCACAGCCGAAGAAGACTTCTTCGGGAAGTGGAAGGCCACGTGGCCGTCCGCCGAAGAAGGTCAAGTGCTCTCCTGCAGCTCCGGCTTCAGTTCCATCTCCTGGCGACGGAGCTCGTCGAGGGAGGGGACGACCTCCGAAGGTGAAACCGGCGGTGGCAGCAGTTGGTTGTTGA 567 57.32 MSADEANNPSSAPSLESHDHYPEMITAAIEALDGKTDKSAISYYIEMNYTDLPNSHSTLVSHHLDVMKENGQFTLVDSNYVKADLNAPAKRGRGRPPKAKVSSSPAAAAGMAGPPRPRGRPPKLRDPFAPVSQPKKTSSGSGRPRGRPPKKVKCSPAAPASVPSPGDGARRGRGRPPKVKPAVAAVGC 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7097210 7098136 + Conep13aG0076900.1 Cone13ag0745 451132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0745 188 PRINTS High mobility group protein (HMGY) signature 131 150 IPR000116 GO:0000785(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone13ag0745 188 PRINTS High mobility group protein (HMGY) signature 88 100 IPR000116 GO:0000785(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone13ag0745 188 PRINTS High mobility group protein (HMGY) signature 117 128 IPR000116 GO:0000785(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone13ag0745 188 SMART AT_hook_2 170 182 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 SMART AT_hook_2 90 102 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 SMART AT_hook_2 115 127 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 SMART AT_hook_2 142 154 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 SUPERFAMILY Winged helix DNA-binding domain 17 90 IPR036390 -
Cone13ag0745 188 MobiDBLite consensus disorder prediction 1 15 - -
Cone13ag0745 188 MobiDBLite consensus disorder prediction 1 20 - -
Cone13ag0745 188 Gene3D - 14 100 IPR036388 -
Cone13ag0745 188 Pfam linker histone H1 and H5 family 18 77 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone13ag0745 188 MobiDBLite consensus disorder prediction 86 188 - -
Cone13ag0745 188 PANTHER HISTONE H1 12 178 - GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0030261(PANTHER)|GO:0031492(PANTHER)|GO:0045910(PANTHER)
Cone13ag0745 188 PRINTS AT-hook-like domain signature 140 150 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 PRINTS AT-hook-like domain signature 90 100 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 PRINTS AT-hook-like domain signature 113 124 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 SMART h15plus2 17 79 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone13ag0745 188 Pfam AT hook motif 90 101 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 Pfam AT hook motif 115 123 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 Pfam AT hook motif 171 181 IPR017956 GO:0003677(InterPro)
Cone13ag0745 188 Pfam AT hook motif 142 152 IPR017956 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0745 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0745 Cone-Chr13:7097210 Cone19ag0751 Cone-Chr19:6136839 1.58E-90 wgd
Cone13ag0745 Cone-Chr13:7097210 Cone6ag0385 Cone-Chr6:1877082 9.78E-32 wgd
Cone13ag0745 Cone-Chr13:7097210 Cone9ag0412 Cone-Chr9:1910825 1.09E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g463 . . . . . . . . . . . . . . . . Cpe01g01840 . . . . . . . . . . . . . . Cone13ag0745 . Cone6ag0385 Cone9ag0412 . Csa05g02012 . . . . . . . . . . . . Cmo15g01006 . Cma15g00964 . Car15g00911 Cpe13g00360 . Bhi12g00922 . . . . . . Cla01g00621 Cam01g0649 Cec01g0642 Cco01g0667 Clacu01g0637 Cmu01g0611 Cre09g1891 Lsi09g00671 . Chy09g00839 Cme09g01371
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2