Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone13ag0750 | ATGAGCAATAAGTTTCTGGGTCTTCTTCGAATTCGGGTGCAGAGGGGTGTTAATCTAATTCTGTGCGACACAAGTAGCAGCGATCCTTACGTTGTCATTTCCTCTGGTCCACAGACTTTAAAAACTCGAGTAGTGAAAAACAATTGCAATCCCGAATGGAATGAGGAGCTGACTCTTGGTATCTCAGATTTGAATACTCCTATCACCCTTACAGTGTTTGACAAGGACACGTTAACTAAAGATGACAAAATGGGTGATGCAGAGATTGACATTAAACCCTACGTAGAATGTTTGCAAATGAGGTTGTCGGAGCTACCAGATGGTTGCGTTGTAAAAAGAGTACAACCAAGCAAGGCAAACTGTCTTTCTGATGAGAGCTCTTGTGTTTATAATAAAGGTAAAGTAACTCAAGACATGTGTCTCAAATTGAGGAATGTAAAACATGGAGAAGTCGTGATTCAGATTGAGTGGATAGATCTTTCTGGAGCTAGTGGTCTTGGAATTTAG | 507 | 40.63 | MSNKFLGLLRIRVQRGVNLILCDTSSSDPYVVISSGPQTLKTRVVKNNCNPEWNEELTLGISDLNTPITLTVFDKDTLTKDDKMGDAEIDIKPYVECLQMRLSELPDGCVVKRVQPSKANCLSDESSCVYNKGKVTQDMCLKLRNVKHGEVVIQIEWIDLSGASGLGI | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7118508 | 7120472 | + | Conep13aG0077400.1 | Cone13ag0750 | 451137 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone13ag0750 | 168 | ProSiteProfiles | C2 domain profile. | 1 | 107 | IPR000008 | - | |
| Cone13ag0750 | 168 | Pfam | C2 domain | 7 | 93 | IPR000008 | - | |
| Cone13ag0750 | 168 | Gene3D | C2 domain | 5 | 163 | IPR035892 | - | |
| Cone13ag0750 | 168 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 4 | 162 | IPR044562 | - | |
| Cone13ag0750 | 168 | SMART | C2_3c | 8 | 103 | IPR000008 | - | |
| Cone13ag0750 | 168 | CDD | C2_ArfGAP | 6 | 149 | - | - | |
| Cone13ag0750 | 168 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 5 | 158 | IPR035892 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag0750 | Cone-Chr13:7118508 | Cone5ag0481 | Cone-Chr5:2024642 | 5.01E-34 | dispersed | |
| Cone11ag0281 | Cone-Chr11:1364173 | Cone13ag0750 | Cone-Chr13:7118508 | 2.47E-58 | wgd | |
| Cone13ag0750 | Cone-Chr13:7118508 | Cone16ag0530 | Cone-Chr16:7333253 | 3.98E-62 | wgd | |
| Cone13ag0750 | Cone-Chr13:7118508 | Cone2ag0473 | Cone-Chr2:2544059 | 1.91E-62 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone13ag0750 | - | - | - | 0.0 |