Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0762 ATGGATGATGAAGTGGTTCAGCGAGTGTTCCAAGAAGGAGGGAGAGATTACTTTCAACAACAGCCTTCTACTTCCTCTTCTTCATCTTCGATTCTTCAATCACTCCCTCTTCACGTGTCATTTGATCATGGGTACTATTTATTAGTAAAATCTATTCAAGAACTTAGAGAGAAGAAAGATGGTCTTGTTACAGTTGGCATCGGCGGTCCTAGTGGATCTGGTAAATCCAGCTTATCAGAGAAGGTGGCATCTGTTATTGGATGTATTGTTATATCAATGGAGAACTATCGCCGCGGAGTTGATGAAGGAAATGACTTGGATTCAATAGATTTTGATGCACTAGTCCAAAATATTGAGGATTTGACCAAAGGTGAAGAAACAGTAATCCCAGTTTTTGACTATCATCAAAAGAAATGCGTTGGCTCAAAAGTAATAAATAGTGCTTCATTTGGGGTGGTCGTTGTTGATGGTACCTATGCCCTACATGCAAAATTGCGCTCTTTGCTAGACATTCGGGTTGCAGTGGTTGGTGGAGTTCATTTTAGTCTTCTTTCTAAGGTTCAATATGATATTGGAGATTCCTGTTCGCTAGATGACCTTATTGATAGCATTTTCCCATTGTTCAGAAAGCACATCGAGCCAGACCTTCATCATGCGCAGATTAGAATTAACAACAGCTTTGTGTCGTCATTTAGGGAGGCCATATATAAGCTGAAATGTAGATGTGAGTTCTCAGAAGTGCATTCTGCTCAGGCCTTTCGAGGAAAGAAATCACACACTGATAATTTTATTGAGATGTACCTTCGACCTCCTTCTGCAAGTGAAGAAGCACGAATAAACGATTGGATCAAGGTGCGACAATCTGGTATTAAATATTATCTCTCACTTGGTGACCAGAGAATTGTTGACAAGAATTTCATTATCAGGCCTAAAGCTGAATTTGAGGTTGGAAAAATGACTCTAGGTGGGTTACTGGCTTTGGGGTACAATGTTGTGGTGAGCTATAAACGGGCATCTACGTCTGTCAGTTATGGCAATGTTTCACTGTCTCTTGAAACTATTGATACCCTCAGTGAGACTTTCATGGTGCTACGAGGCACAGACAGAAAAACGGTTGGAACAGAAGTATCGAGGATGGGCATCAATGGACCTTGGATCACGAAGTCATATCTGGAATTGATTCTTGAAAGTAAAGGTGTGCCTCGCCTTAATACACCGCCACCTTTGTCTAGTCCCCCTTTGACTAGTAATCATGAAAAAGCTGCTGTTGCACCAAGGCCAATCCGTGTTACTCCCAACATTGTTACACGCCTTGAGGATTTATCTCAGCCATGGACTCGATCTCCAACGAAATCTAAAATGGAACCTGTAGTAGCAACATGGCAATTCATCTCTTCAGGTCCCTCCAACACTGATCCTTCCTCTTTCAGGGGTACCTTGAAGCTTGCTCCAATGCCTGATTCCTGTGACTTGGATAGAGGGTTGCTCTTAGCAGTTCAAGCAATACAAGCATTGTTGGAGAATAAGGGCTTCCCAGTTATAGTTGGAATTGGTGGTCCAAGTGGATCAGGAAAGACTAGTTTAGCTCACAAAATGGCAAATATAGTTGGCTGTGAAGTAGTTTCTCTAGAGAGCTATTACAAATCTGAACAAGTGAAGGATTTTAAGTATGATGACTTCTGCTCACTGGACCTATCATTGCTATCAAGGAATATTGATGACATCAGGAACAATCGAAAAACACAAGTACCTATATTTGACCTGGAGACAGGTGCTCGCAGCAGCTTCAAGGAACTCAATGTTTCTGAAGATTGTGGTGTGATAATTTTTGAAGGGGTTTATGCTTTGCATCCTGATATCAGAAAATCACTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATCTGATATCTCGAGTTCAAAGAGATAAAAGTAGAGTGGGATGTTTTAGGTCTCAAAATGAGATCATGATGACAGTGTTTCCAATCTTCCAGCAGCACATTGAACCGCATCTTGTTCATGCACATCTCAAAATTAGAAATGACTTTGATCCAGTGCTTTCCCCTGAGAGCTCATTGTTTGTATTGAAGAGTAACAAACAGGTGGCTTATCAAGATATCCTAAAGATACTTGATCCTGAGAAGTATTTCAGTTCCATTCAGAATTTCATTGATATTTATTTGAGACTTCCTGGAATTCCTACTAACGGCCAGTTGGCAGAGGGTGACTGTATACGAGTACGGATCTGTGAAGGTCGATTTGCATTGCTGATAAGGGAGCCTATTCGAGAGGGGAACTTTATCATTCAACCTAAGGTGGACTTTGATATTGGTGTCAGTACAGTAGCTGGCCTTCTTAACCTTGGGTATCAAGCTGTAGCTTACATTGAGGCATCTGCACACATCTACCAAGATGGAAAGGTTTTAGTTGAGGTTGACCATCTACAAGATGCTCCTAGTCCTTATCTGCAAATCAAAGGAGTTGATAAAGAGGCTGTTTCAGCTGTTGGTTCATTGCTTAAACTAGATGATTCTTATACAACAAAGAGCTATCTTCAAATAATCTTGGAAAGCTTACCAGCATTGGAAAGTTCAGGCGGTATTCAAAATCAGCAAGCTGCAAAGCTACAGGAACTTATGGAATTTATTCAATCTCAGGGAAGCAGTTCAGCTTCGGATTCCTCTCTGACCAGGGAGGTCTCCTCCTCAATAGATGCCATCATTGAAGACATGCAGTCAAGGATCAAAAGGCTCGAGCGCTGGCATACAATTAATACTGTTTTATGGACCTTTTTTATGTCTGCTCTTGTTGGTTACTCGCTCTACCAAAGGAAGCGCCACTGA 2850 41.37 MDDEVVQRVFQEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKSSLSEKVASVIGCIVISMENYRRGVDEGNDLDSIDFDALVQNIEDLTKGEETVIPVFDYHQKKCVGSKVINSASFGVVVVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVQYDIGDSCSLDDLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRCEFSEVHSAQAFRGKKSHTDNFIEMYLRPPSASEEARINDWIKVRQSGIKYYLSLGDQRIVDKNFIIRPKAEFEVGKMTLGGLLALGYNVVVSYKRASTSVSYGNVSLSLETIDTLSETFMVLRGTDRKTVGTEVSRMGINGPWITKSYLELILESKGVPRLNTPPPLSSPPLTSNHEKAAVAPRPIRVTPNIVTRLEDLSQPWTRSPTKSKMEPVVATWQFISSGPSNTDPSSFRGTLKLAPMPDSCDLDRGLLLAVQAIQALLENKGFPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYYKSEQVKDFKYDDFCSLDLSLLSRNIDDIRNNRKTQVPIFDLETGARSSFKELNVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKSRVGCFRSQNEIMMTVFPIFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPEKYFSSIQNFIDIYLRLPGIPTNGQLAEGDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDIGVSTVAGLLNLGYQAVAYIEASAHIYQDGKVLVEVDHLQDAPSPYLQIKGVDKEAVSAVGSLLKLDDSYTTKSYLQIILESLPALESSGGIQNQQAAKLQELMEFIQSQGSSSASDSSLTREVSSSIDAIIEDMQSRIKRLERWHTINTVLWTFFMSALVGYSLYQRKRH 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7185580 7193893 - Conep13aG0078700.1 Cone13ag0762 451149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0762 949 Pfam Phosphoribulokinase / Uridine kinase family 514 681 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Cone13ag0762 949 Pfam Phosphoribulokinase / Uridine kinase family 106 224 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Cone13ag0762 949 SMART AAA_5 61 211 IPR003593 GO:0016887(InterPro)
Cone13ag0762 949 SMART AAA_5 511 664 IPR003593 GO:0016887(InterPro)
Cone13ag0762 949 PANTHER URIDINE KINASE 501 896 - GO:0005737(PANTHER)
Cone13ag0762 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 684 IPR027417 -
Cone13ag0762 949 SUPERFAMILY CYTH-like phosphatases 707 856 IPR033469 -
Cone13ag0762 949 CDD UMPK_like 514 684 - -
Cone13ag0762 949 CDD UMPK_like 83 226 - -
Cone13ag0762 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Cone13ag0762 949 Gene3D - 240 399 - -
Cone13ag0762 949 Gene3D - 698 861 - -
Cone13ag0762 949 Gene3D - 511 690 IPR027417 -
Cone13ag0762 949 Gene3D - 63 239 IPR027417 -
Cone13ag0762 949 PRINTS Uridine kinase signature 512 529 - -
Cone13ag0762 949 PRINTS Uridine kinase signature 539 550 - -
Cone13ag0762 949 PRINTS Uridine kinase signature 635 645 - -
Cone13ag0762 949 SUPERFAMILY CYTH-like phosphatases 250 394 IPR033469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0762 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0762 Cone-Chr13:7185580 Cone13ag0881 Cone-Chr13:7814408 5.66E-65 dispersed
Cone13ag0762 Cone-Chr13:7185580 Cone19ag0766 Cone-Chr19:6221028 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g429 . . . . . Bpe10g00920 . . . . . Cma04g00029 . . . . . . . . . . . . . . . . . . . Cone13ag0762 Cone19ag0766 . . . . . Cme10g01474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35