Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0764 ATGGCTGGGCACCCTGTAGAGAACCTACAGACATCCGACCAGGCGTTTTCTTCTGGTCTTATTTATACACATTTTGACTTTGCTTTTGGGCTGTGTCCGGTAAACGGGTCAAGAATAGCCCAGCCCGTGCTCTGTTCGCGGCTAATGAACGAATATTTACGATTTTACCTCCCAAAAAAAAAAATCCCAACTGTTGACAAAATCGAACCACTCGCGTTGCACTTCCTTTCCATTTCCATTCACGGACGGGAATGGAAGCTCGGGGATCCTCTTCATCAAAGTAACTCCTTTGTTAGTTTTCTCTCAGAATGTCCAATTCCTGATGTAAGTTTTGTTGCACATGGCATTGATGAAATCGATTGCACAACCATGCAGTCTGGTATGGATCTCTGTTTCTGTAGGCATCAATTGAGAAGTGCAGTAGTTTATGGATTTGAGAGAAGCTGCCGGAACGCTTTAGGTAGAAAAATGAGGTTAAATAAATATCTCCTCTTTAGTGTACCGAGATTATGCTCTCGATCGAAGCATAGGTTTGCTGGAAATCCTTTAGAGGAAGAAAGTGATTATCAGGCTACAAGTATCTCGGATGGATCGCCGTTGCTTAATGAGGCGATATCAGTTGTGAGGGTTTACAATAGGCATCATGGTTCAATTGATGATGAAGGATACAGAAAATCATTTGTTACAACTCCGAAAGATGAAATGGACGATTTTGACATCGCCTTGGCATGTAAAAGATTTCCATCTATTACCTTGGGCAGCTCTCCTCCTATAGAATTATATGATGAGACTGCAAGTTATTCAGAAATGAAAAGGGTTATGGAAACTGTAGACTATGAAGACCTTCTTTTAAATCCAACAAGTGAACTGCATGGAACCTGGCCTTCTATGTGTCCTGTCCTTCCAAGTGCAGAAACTTCCCCAAAAGGCGAAGATTCTTATTATAGCGGAGTCCCTATGTCTCCTGGGCCTGTAGATTTGGTGAGTGAAGAGGTAATGCCTGATCTTCCAGCTGCTAAAGAGGTGAATTCCTCCAAAGTGGAGCAGGAATCACAGAACAATGCTGCATCTGGTATGCTATTCCTTGATGGGTCTTTGAATTCTCTTCAAGGACTCAGTAAGAGGAACATTCATCAGCTTGAAAACTGTGGCTTTCATACGGTGAGGAAATTGCTACACCATTTTCCTCGGACTTATGCCGACTTACATAATGCACAGATTAGAATTGATGATGGGCAGTACTTGATTTTCGTAGGGAAGGTCTTGTCTTCGAGGGGAATCAAAGCTAGCTATAGTTTTTCCTTTCTTGAGGTAGTCGTGGGATGTGAAATCACTGAAAATGAAGCATCTGAGCACATGGTTGGTGATAATATGGGGGAAAAGAAGCTTATTTATTTACACCTGAAGAAATTTTTTCGTGGTACTCGTTTCACTTTCCAGCCTTTTCTTAGAAGTCTTGAAGGGAAGCATAAAGAGGGAGATGTTGTTTGTGTTAGTGGTAAGGTAAGGACTATGCCTACTAAAGACCACTATGAAATGAGAGAATATAATATTGACATGATTGGAGATGCAAAAGATTCTTCTACTTGTGCAAAAGAGAGGCCATATCCTATATATCCCTCCAAAGGAGGGTTAAATCCAGATTTTCTTAGAGAGATTGTTGCCAGATCTGTTCAGAACTTGCCTGTCAATATTGATCCCATTCCAGGAGATATCACTCAAGAATTTGGACTATTAAGTCTTCACGATGCATACGCTGGGATTCATCAACCAAGCAGTATGAGTGAGGCTGATTTGGCTCGAAAAAGGCTTATATTTGACGAGTTCTTTTACATTCAGTTGGGGCGCTTATTCCAAATGCTTGAAGGTCTTGGTACAAAAATAGAGAAAGATGGATTGCTGGCCAAGTATAGAAAACCGCAATCAAATGCTGTATATATGGAGGGGTGGTCCACTCTCACAAAGAAGTTTTTGAAGGCTCTGCCTTATTCCCTTACTTCTAGTCAGTTAAATGCGGTTTCAGAAATTATTTGGGATTTAAAGCGACCGATTCCCATGAACAGGCTCTTGCAGGGTGACGTAGGATGTGGGAAGACAGTAGTAGCTTTTTTGGCATGTATGGAAGTTATAGGATCTGGATATCAGGCTGCTTTCATGGTTCCAACTGAGTTGCTTGCAACCCAGCATTATGAACACTTACTTTGTTTGCTAGAGGAGATGGAAGAGGTCCCAAATAAACCTTCTGTTGCTTTATTAACGGGCTCAACCCCATTAAAACAGGCCAGGATTATTCGTCAGGGTCTCCAATCTGCAGAGATCTCACTCGTCATCGGAACCCACAGCTTAATATCTGAAAATGTGGAGTTCTCTGCCTTACGCATTGCTGTAGTGGATGAACAACATCGTTTTGGTGTCATCCAGAGAGGAAGGTTTAACAGTAAGTTATACTATAACTCTGCAAGCTCAACAATGACGGCTGGAGATTCTGTCAAACCTTCAAAAGGTGATGTTCACATGGCCCCTCATGTTCTTGCCATGTCAGCCACACCTATCCCAAGGACACTTGCTCTGGCTTTATATGGAGATATGTCCCTCACACAAATAACTGACTTACCTCCGGGAAGAATACCTGTTGAAACATGTATTGTTGAAGGAAATGATGGTGGGTTTGAGAAGGTCTATAAGATGATGCTTGATGAATTACAAGAAGGAGGAAAGGTATATTTGGTGTATCCTGTCATTGAACAATCCGACCAGTTGCCCCAGCTTCGAGCCGCTTCTGCAGATCTTGAAGACATGTCTAACAGATTTAATGGCTATTCCTGTGGGTTGTTACATGGAAAAATGAAGAGCGATGAGAAAGATGGAGCACTAAGACGGTTTAAATCAGGCGAAACGCACATATTACTTGCCACACAAGTTATCGAGATCGGAGTTGATGTTCCTGATGCTTCCATGATGGTTGTCATGAACGCTGAGAGATTTGGAATAGCTCAGTTGCACCAACTTAGAGGACGGGTTGGAAGGGGAGTGAAAAAGTCTAGCTGTATATTGATAGCATCTACCCCTAGTGGCCTAAGCCGCTTGAGGGTGTTGGAGAAATCTTCAGATGGTTTCCATTTGGCAAATATCGACCTCCTTTTACGTGGACCTGGTGACTTGCTTGGTAAGAAACAATCGGGTCATATTCCTGAGTTCCCTATTGCAAGATTGGAGGCAGATGGCAATATTCTACAAGAAGCTTATCTAGCAGCACTGAAAATCTTAGGGAGTTCTCATGATTTGGAGCGGTTTCCGGCCCTTAAGAAGGAGCTTAGCATTAGACAGCCACTCTGCCCTCTTGGTGATTAA 3351 42.44 MAGHPVENLQTSDQAFSSGLIYTHFDFAFGLCPVNGSRIAQPVLCSRLMNEYLRFYLPKKKIPTVDKIEPLALHFLSISIHGREWKLGDPLHQSNSFVSFLSECPIPDVSFVAHGIDEIDCTTMQSGMDLCFCRHQLRSAVVYGFERSCRNALGRKMRLNKYLLFSVPRLCSRSKHRFAGNPLEEESDYQATSISDGSPLLNEAISVVRVYNRHHGSIDDEGYRKSFVTTPKDEMDDFDIALACKRFPSITLGSSPPIELYDETASYSEMKRVMETVDYEDLLLNPTSELHGTWPSMCPVLPSAETSPKGEDSYYSGVPMSPGPVDLVSEEVMPDLPAAKEVNSSKVEQESQNNAASGMLFLDGSLNSLQGLSKRNIHQLENCGFHTVRKLLHHFPRTYADLHNAQIRIDDGQYLIFVGKVLSSRGIKASYSFSFLEVVVGCEITENEASEHMVGDNMGEKKLIYLHLKKFFRGTRFTFQPFLRSLEGKHKEGDVVCVSGKVRTMPTKDHYEMREYNIDMIGDAKDSSTCAKERPYPIYPSKGGLNPDFLREIVARSVQNLPVNIDPIPGDITQEFGLLSLHDAYAGIHQPSSMSEADLARKRLIFDEFFYIQLGRLFQMLEGLGTKIEKDGLLAKYRKPQSNAVYMEGWSTLTKKFLKALPYSLTSSQLNAVSEIIWDLKRPIPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLCLLEEMEEVPNKPSVALLTGSTPLKQARIIRQGLQSAEISLVIGTHSLISENVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYNSASSTMTAGDSVKPSKGDVHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVETCIVEGNDGGFEKVYKMMLDELQEGGKVYLVYPVIEQSDQLPQLRAASADLEDMSNRFNGYSCGLLHGKMKSDEKDGALRRFKSGETHILLATQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGVKKSSCILIASTPSGLSRLRVLEKSSDGFHLANIDLLLRGPGDLLGKKQSGHIPEFPIARLEADGNILQEAYLAALKILGSSHDLERFPALKKELSIRQPLCPLGD 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7198301 7203979 + Conep13aG0078900.1 Cone13ag0764 451151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0764 1116 CDD DEXHc_RecG 604 872 - -
Cone13ag0764 1116 Pfam Helicase conserved C-terminal domain 893 1009 IPR001650 -
Cone13ag0764 1116 NCBIfam ATP-dependent DNA helicase RecG 383 1081 IPR004609 GO:0003678(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone13ag0764 1116 SUPERFAMILY Nucleic acid-binding proteins 360 561 IPR012340 -
Cone13ag0764 1116 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 1036 1093 IPR045562 -
Cone13ag0764 1116 Gene3D - 878 1049 IPR027417 -
Cone13ag0764 1116 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 157 1115 IPR047112 GO:0003678(PANTHER)|GO:0006281(PANTHER)|GO:0006281(InterPro)
Cone13ag0764 1116 Pfam DEAD/DEAH box helicase 686 854 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone13ag0764 1116 SMART ultradead3 661 879 IPR014001 -
Cone13ag0764 1116 SMART helicmild6 928 1011 IPR001650 -
Cone13ag0764 1116 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 679 868 IPR014001 -
Cone13ag0764 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 872 IPR027417 -
Cone13ag0764 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 873 1066 IPR027417 -
Cone13ag0764 1116 Gene3D - 620 869 IPR027417 -
Cone13ag0764 1116 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 893 1052 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0764 K03655 - - vvi:100252614 1302.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0764 Cone-Chr13:7198301 Cone18ag1470 Cone-Chr18:9818721 1.28E-18 dispersed
Cone13ag0764 Cone-Chr13:7198301 Cone11ag0006 Cone-Chr11:57362 2.33E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g422 . . . . . . Bma14g01597 . . . . . . . . . . . . . . . . . Cla07g00622 Cam07g0642 . Cco07g0699 . Cmu07g0670 Cre07g1019 Cone13ag0764 . . . Lsi04g01153 . . Cme10g01515 . Blo11g00729 . . Bpe11g01604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006958 1 2 1 1 1 2 1 2 1 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 2 1 1 37