Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0773 ATGGCCGGTCGAGTCGTTGGAGGTGGAGACCGGAATCCTCCGGTGGGTGCACTAATCGACCTAGTAAACGACATCGTTCGAATTTCGGCTGGAACTGCCGGCGATGTCTTCAAGAAAGACTGCACCGATCTGGTCCGTCGGATCGCGCTTTTGACTCACTTATTTGATGAGATGACGAACTTCGAGGTGGACGATCCTCGGCCGGTGAATGTCGCCATTCCTTCTTCTTCTTCTTCTTCTTCTTTGACTCCTACTAGTACTAATACTGCAGCCGGTAATAGTAAAGTGGAGTCGTTTCCATGGCTGTTCGATCTGGAGGTGGCTCTGAAGACTGCCAAGCACCTCCTTTTCATCGTCGGGGCGTTCCGTTCCAGCAACAACTCTTCTGATGGAGCTTCCAAGAAAATAGCCTTCCAGTTTCAATTTGTGACATTAAAGTTAGAGAAAGCATTGGGAAATCTGCCATATGCTCGCTTGAATATCTCAGAAGAAGTCGAAGAACAGGTTGAACTGGTAAGGGCGCAGTTGAAGAGAGCTGCAGATAAATATGGGTCTCTAACTTCAGCTTCGGCATCACTTGCTCTATCCCACCCGCTGGACAGAGAAATACATCTTTTAGTATCTGAAAACTGGGAAAATGACTTTTGTTTAGAGAACATTGATACTACAAATGATGAAGTTACAGTCAAGCTGGATGCTCTTCCCAATTGTGATGGTTTGATCAGCCCTAGTGTGGATCAAACAAATTGTGCATCAGAACGGCTGAGGAAAGTTCCTTCTTCCTCTGAGGTTTGTTTGGATGATGCTCATTCCGACAATCAAGACAACTCAGTCGGCAAGAACTTAGATGAGATTAAGAAGCCTGATCCAGTTACAATTCCTGAGGATTTCTTATGCCCTATTTCCCTGGAATTAATGCGGGATCCTGTTATTGTGGCCACGGGACAGACATATGAGAGGTCTTACATACAGAGGTGGATTGATTGTGGAAATCTTACTTGCCCTAAAACTCAACAGAAGCTCCAAAATTTTACACTGACCCCAAATTACGTCTTGAGAAGCCTTATCTCACAGTACTGTGTTCAGCACAATATAGAGCAACCAACAGTATTAACTAATGGTAGAATCAAAAAAATTGATGGATCATATCGTGATGTTTGTGGAGAGATAGCAGCCATTGAAGCTCTTGTCCGGAAGCTCTCTAGCCATTCCATTGAGGAGCAGAGATCCGCTGTTGCAGAAATCCGATCTCTTTCAAAAAGAAGCACAGATAACAGAATACTAATAGCAGAAGCAGGAGCAATTCCAGCTCTAGTCAATCTCTTAACTTCAGACGATTTATTAATACAAGAAAATTCTGTCACCTCTATCCTCAACCTTTCTATATACGAAAATAACAAGGGACTTATAATGCTAGCAGGGGCAGTTCCTTCTATTGTCCAAGTCCTAAGAGTAGGAAGCATGGAAGCTCGAGAAAATGCAGCGGCGACATTTTTTAGCTTGTCGCTTGCAGATGAGAACAAGATAATTATAGGTGCATCAGGGGCAATTCCAGCATTAGTGGAATTGCTCCAAAATGGAAGCTTGAGAGGGCAAAAGGATGCTGCGACGGCTCTGTTCAATTTATGCATCTATCAAGGAAACAAGGGCAGGGCAGTAAGGTCCGGAATTGTTTCTGCATTATTGAAAATGCTAACAAATTCAAGTAACTGCATGGTTGATGAAGCTTTGACTATAATGTCTGTTCTTGCAAGCCATCAAGATGCAAAGGTTGCTCTTGTAAAAGCTAGCACTATTCCTGTCTTGATTGACCTTCTCAGGACCGGTCTACCTAGGAACAAGGAAAATGCGGCTGCAATTTTACTTGCCTTGTGCAAAAGAGATCCAGAGAATCTTGCCTGTATAAGTAGGCTCGGGGCTGTTATTCCTTTGACCGAGCTTACTAGGAGTGGAACAGAGAGAGCCAAAAGGAAAGCTACTTCTTTGTTGGAGCATCTTAGAACGTCACAGCATCTCTAA 2019 43.78 MAGRVVGGGDRNPPVGALIDLVNDIVRISAGTAGDVFKKDCTDLVRRIALLTHLFDEMTNFEVDDPRPVNVAIPSSSSSSSLTPTSTNTAAGNSKVESFPWLFDLEVALKTAKHLLFIVGAFRSSNNSSDGASKKIAFQFQFVTLKLEKALGNLPYARLNISEEVEEQVELVRAQLKRAADKYGSLTSASASLALSHPLDREIHLLVSENWENDFCLENIDTTNDEVTVKLDALPNCDGLISPSVDQTNCASERLRKVPSSSEVCLDDAHSDNQDNSVGKNLDEIKKPDPVTIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNLTCPKTQQKLQNFTLTPNYVLRSLISQYCVQHNIEQPTVLTNGRIKKIDGSYRDVCGEIAAIEALVRKLSSHSIEEQRSAVAEIRSLSKRSTDNRILIAEAGAIPALVNLLTSDDLLIQENSVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATFFSLSLADENKIIIGASGAIPALVELLQNGSLRGQKDAATALFNLCIYQGNKGRAVRSGIVSALLKMLTNSSNCMVDEALTIMSVLASHQDAKVALVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDPENLACISRLGAVIPLTELTRSGTERAKRKATSLLEHLRTSQHL 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7267140 7270440 - Conep13aG0079800.1 Cone13ag0773 451160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0773 672 FunFam RING-type E3 ubiquitin transferase 572 671 - -
Cone13ag0773 672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 366 IPR013083 -
Cone13ag0773 672 FunFam RING-type E3 ubiquitin transferase 376 469 - -
Cone13ag0773 672 SMART arm_5 628 668 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 SMART arm_5 586 626 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 SMART arm_5 463 503 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 SMART arm_5 545 585 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 SMART arm_5 504 544 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 SMART arm_5 422 462 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 SMART Ubox_2 296 359 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone13ag0773 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 PANTHER U BOX DOMAIN-CONTAINING 36 668 - -
Cone13ag0773 672 FunFam RING-type E3 ubiquitin transferase 290 366 - -
Cone13ag0773 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 MobiDBLite consensus disorder prediction 265 286 - -
Cone13ag0773 672 Coils Coil 162 182 - -
Cone13ag0773 672 MobiDBLite consensus disorder prediction 72 92 - -
Cone13ag0773 672 Gene3D - 468 575 IPR011989 -
Cone13ag0773 672 Gene3D - 371 467 IPR011989 -
Cone13ag0773 672 Gene3D - 576 671 IPR011989 -
Cone13ag0773 672 ProSiteProfiles U-box domain profile. 292 366 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone13ag0773 672 Pfam Armadillo/beta-catenin-like repeat 422 461 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 Pfam Armadillo/beta-catenin-like repeat 505 543 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 Pfam U-box domain 293 364 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone13ag0773 672 SUPERFAMILY ARM repeat 390 666 IPR016024 -
Cone13ag0773 672 SUPERFAMILY RING/U-box 290 367 - -
Cone13ag0773 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 391 433 IPR000225 GO:0005515(InterPro)
Cone13ag0773 672 CDD RING-Ubox_PUB 294 346 IPR045210 -
Cone13ag0773 672 FunFam RING-type E3 ubiquitin transferase 470 570 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0773 Cone-Chr13:7267140 Cone18ag0344 Cone-Chr18:1688095 2.59E-63 dispersed
Cone13ag0773 Cone-Chr13:7267140 Cone19ag0775 Cone-Chr19:6313333 4.26E-290 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0773 - - - 0.0