Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0790 ATGGTATGGACAAGAGAGAGATCGGATGTGAGAGCACTCGAGGAAAACATGGCATCGTACTTCAATATGTTGCAGGGTTTCCTCCTGCTTTCCCATGGAAGTGTAGTCAATGCGGGCCCCACACTGTCTTCTAATATTCACGCTTCTTTGAAGCTAGTGGTTGACTGCAGTTTCAAGTGCAATCTGGGAAGCTTGTGCTGGTCCAAGAAGACTCCTACAAATTCTACGGCGATTGGGAGAGCAATAACTCAAGTTGCTGTTTCAATGAAGGATGTCCTAAGAGAGATGAAAGAGCTCAAGCCATCTGCCTCAGACTTTACTGACGAGTCTTCAAGCAAAGCAGGAACTGAATCAAACAATGAAGATAATGATGATGATGAATCACTTGTGTTTTTAAAGGAACTTATTTGTGTCCTAACGGGTTTGGTTAAGCTTGAAAATGGGAATGAAAGAGGTAAGTTTGTGGATTCATTGGAGAAGATATTGAAGCTGTGTCAAGGATTTGGTGTAGAGGTTGATGAGATTGGAGCTTCTCTTTAA 540 42.41 MVWTRERSDVRALEENMASYFNMLQGFLLLSHGSVVNAGPTLSSNIHASLKLVVDCSFKCNLGSLCWSKKTPTNSTAIGRAITQVAVSMKDVLREMKELKPSASDFTDESSSKAGTESNNEDNDDDESLVFLKELICVLTGLVKLENGNERGKFVDSLEKILKLCQGFGVEVDEIGASL 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7356560 7357403 + Conep13aG0081500.1 Cone13ag0790 451177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0790 179 MobiDBLite consensus disorder prediction 101 125 - -
Cone13ag0790 179 Pfam Grap2 and cyclin-D-interacting, N-terminal 1 59 IPR049317 -
Cone13ag0790 179 Pfam Grap2 and cyclin-D-interacting, N-terminal 73 101 IPR049317 -
Cone13ag0790 179 PANTHER CYCLIN D1-BINDING PROTEIN 1 72 179 IPR026907 GO:0005634(PANTHER)
Cone13ag0790 179 Gene3D I/LWEQ domain 72 134 - -
Cone13ag0790 179 ProSiteProfiles Cro/C1-type HTH domain profile. 150 175 IPR001387 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0790 K21626 - - cit:102620219 196.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0790 Cone-Chr13:7356560 Cone19ag0794 Cone-Chr19:6410583 1.64E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g384 . . . . . . . . Cmo04g01548 . . Cma18g00987 Car04g01534 Car18g00908 Sed07g2128 Cpe09g00330 Cpe01g01318 Bhi07g01256 Tan04g0793 Cmetu10g0036 Lac13g0546 Hepe01g1151 . . . . . . . . . Cone13ag0790 . . . Lsi04g00209 Csa05g02658 Chy10g01190 Cme10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012569 0 1 1 1 1 1 2 1 1 1 1 1 3 1 1 0 1 2 1 1 1 0 1 1 1 0 0 1 1 1 29