Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0794 ATGAAGGACCGGTCTCCTTCCTCGTATGGCGCCGTCTATGTTCCTCCTCCTCATCGCCTCCGCTCCGTTATTTCTTCTCCGAATTACATCTCTCCTTCTTCTGTTATCGATTCTAAGCTCCGTGAAACCCACACTGCGGCTGTTGTAAAGCCAAAAACCACTACTCTTCTTTACTTGCATACTCAGGAGCAGCTCCCTAAGGGGCATTCTAACTCGAATTTGAATGCTTATACTGCGCAGTGCAAATCTGCGTATGACGATGGGGTTTCTGAGGATGGCTCAGATCATGAACTTGACTCAGCTTGGCCACAAGCTGATTCATCATTGACCAGCATTGATGAGTGGAAAAGGAAGCTGACCTTACTTCTCCGGGACAAGAAGAAGCAGGAGTTGGTTACAAGGGAGAGAAAGGATAGACGTGATTTTGAGCAAATAGCAGCTTTGGCTAGCATAATGGGGTTGTTTGGCCATATTTATGCCAAAGTTGCTGTTTTTAGTAAGGTCCCTTTGCCAAACTACAGATTTGATTTGGATGATAAGCGTCCACAGAGAGAGGTAACTCTGCCTATTGGGTTGCTAAGAAGAGTTGATGCCCATCTTGTGAGGTGTCTTTCTCTCTCCCCCCTTCAATGTGAAGAAGAACAATTTCTGTTTTATGTTTTCTCCTTACAGGGTGTAACTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTGCTTATCGTCCTTAAAGATCTTCTTCCGCGGAAACCAGAGCTAAAATTGATTCTGATGAGTGCAACTTTAGATGCAGAGCTTTTCTCATCTTACTTTGGTGGGGCACAAACAATTAACATTCCTGGATTTACATACCCTGTTCGAACTCATTTTCTGGAGGTTATTCTGGAAACTACTAGCTACAGTTTAACCCCATTCAATCAAGTTGATGATTATGCTCAAATAAAGAATTGGAAAATGAGCAAACAGACCCCAGGCAAGAGGAAAAGTCAGATTGCTTCTGCTGTCGAGGATGCACTTAAATTGGATAATTTTATGGAGTACAGCCGACAGACTCGGGAGTCTTTATCGTGCTGGAACCCTGATTGTATTGGTTTTAATCTCATAGAGCATCTTCTAGTCAACATATGTGAGAATGAAAGGCCTGGTGCTGTTCTTGTTTTTATGACCGGGTGGGATGACATAAGTTCTCTGAAGGATAAGCTCCAGGCCCATCCTTTCTTGGGAGATTCCCGCCATGTTTTGTTGCTGGCATGCCATGGCTCTACGGCTAGTTCAGAACAGAGGTTGATATTTGATAAACCTGCGGAAGGAGTGAGGAAGATAGTCCTAGCTACAAACATTGCACAGACTAGTATAACGATTAATGATGTTGTGTTTGTTCTTGATTGTGGAAAGGCAAAAGAAACGTCATATGATGCACTGAATAACACTCCGTGTTTACTTCCTTCCTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGATCAGGCTGTGTTCAGCCAGGTGAATGTTTTCATCTCTATCCAAGATGTGTATTTGACTCCTTTGCAGAGTGTCAACTGCCTGAGATCTTAAGAATACCTCTTCAGTCCCTTTGTTTGCAAATAAAAAGTTTAAAGCTTGGAAGTATCATGGAGTTTCTATCTAGAGCTTTGCAGTCACCTGAGCAACTAGCGGTTCAGAATGCCATTGACTATTTAAAAACCATTGGGGCTTTGGATGAGAACGAAAATCTCACTGTTTTAGGACGCTATTTGACTATACTTCCCATGGAGCCAAAACTTGGGAAAATGCTTGTATTAGGTGCGATCTTCAATTGCCTGGATCCAATATTGACAATTGTTGCTGGGCTGAGCGTTAGAGATCCTTTTTTGGCACCATTCGACAAGAAGGATCTTGTAGAGGCTGCTAAGTATCGGTTTTCCCGAGATCACAGTGACCACCTTGCACTAGTCCAGGCCTATGAGGGATGGAAAGATGCTGAAATAAATTATTCTGGACATGACTTCTGCTGGAAGAACTTTCTTTCACAACAATCAATGAAAGCTATTGATTCCTTGAGGAAGGAGTTCTTCTCTCTGCTCAGAGATATAGGTCTGGTTGATGGCAACCCAACCATCTCACAGAACCTTGATCATAATCTACATAATGAGAAGTCATTTGCACTCAAGACTATGGAGGATGGCCAGGTGCTTCTATACTCGGATTCAACGGCTGTCTGTGATTCTGTGTTACTCCTACTTGGTGGAAACATCTCAAAAGGGGATATTGATGGTCAGTTGAAAATGTTGGGTGGATATTTGGAATTCGTCATGAACCCTACTGTAGCAGATATGTATCAAAGTTTAAGAAGAGAATTAGAAGAGCTAATTCAGAAAAAACTACTTAATCCCCAGATGGACTTGCACTCCTACCAAATCTGCAGTATACTTGCTTATCTCAGAAGATCAATGTGA 2475 42.26 MKDRSPSSYGAVYVPPPHRLRSVISSPNYISPSSVIDSKLRETHTAAVVKPKTTTLLYLHTQEQLPKGHSNSNLNAYTAQCKSAYDDGVSEDGSDHELDSAWPQADSSLTSIDEWKRKLTLLLRDKKKQELVTRERKDRRDFEQIAALASIMGLFGHIYAKVAVFSKVPLPNYRFDLDDKRPQREVTLPIGLLRRVDAHLVRCLSLSPLQCEEEQFLFYVFSLQGVTHVIVDEIHERGMNEDFLLIVLKDLLPRKPELKLILMSATLDAELFSSYFGGAQTINIPGFTYPVRTHFLEVILETTSYSLTPFNQVDDYAQIKNWKMSKQTPGKRKSQIASAVEDALKLDNFMEYSRQTRESLSCWNPDCIGFNLIEHLLVNICENERPGAVLVFMTGWDDISSLKDKLQAHPFLGDSRHVLLLACHGSTASSEQRLIFDKPAEGVRKIVLATNIAQTSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRSGCVQPGECFHLYPRCVFDSFAECQLPEILRIPLQSLCLQIKSLKLGSIMEFLSRALQSPEQLAVQNAIDYLKTIGALDENENLTVLGRYLTILPMEPKLGKMLVLGAIFNCLDPILTIVAGLSVRDPFLAPFDKKDLVEAAKYRFSRDHSDHLALVQAYEGWKDAEINYSGHDFCWKNFLSQQSMKAIDSLRKEFFSLLRDIGLVDGNPTISQNLDHNLHNEKSFALKTMEDGQVLLYSDSTAVCDSVLLLLGGNISKGDIDGQLKMLGGYLEFVMNPTVADMYQSLRRELEELIQKKLLNPQMDLHSYQICSILAYLRRSM 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7370496 7375811 - Conep13aG0081900.1 Cone13ag0794 451181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0794 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 298 IPR027417 -
Cone13ag0794 824 Gene3D - 200 286 IPR027417 -
Cone13ag0794 824 CDD SF2_C_RHA 363 514 - -
Cone13ag0794 824 PANTHER ATP-DEPENDENT RNA HELICASE 222 719 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005634(PANTHER)
Cone13ag0794 824 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 546 IPR001650 -
Cone13ag0794 824 FunFam DExH-box ATP-dependent RNA helicase DExH3 368 524 - -
Cone13ag0794 824 Pfam Helicase associated domain (HA2), ratchet-like 598 657 - -
Cone13ag0794 824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 285 IPR014001 -
Cone13ag0794 824 FunFam Putative ATP-dependent RNA helicase DHX36 548 652 - -
Cone13ag0794 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 647 IPR027417 -
Cone13ag0794 824 SMART ha2_5 568 658 IPR007502 -
Cone13ag0794 824 Gene3D - 369 525 IPR027417 -
Cone13ag0794 824 Gene3D - 548 650 - -
Cone13ag0794 824 SMART helicmild6 400 506 IPR001650 -
Cone13ag0794 824 Pfam Helicase associated domain (HA2), winged-helix 569 596 IPR048333 -
Cone13ag0794 824 CDD DEXHc_RHA-like 222 284 - -
Cone13ag0794 824 Pfam Helicase conserved C-terminal domain 376 503 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0794 K14442 - - rcu:8275108 941.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0794 Cone-Chr13:7370496 Cone19ag0321 Cone-Chr19:2529751 0 dispersed
Cone13ag0794 Cone-Chr13:7370496 Cone19ag0798 Cone-Chr19:6425135 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70