Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0797 ATGCTTCCCCGTACTCTTCAGTCTTCCAACGTCAAACAACATCTCTTGAGCTCTCTGGTCTCTTACACGCCATACCAAGACTCCGATTCCGATCTTCCAGTAGTCTCCGCTATGGTCGTACGCAGCCATCTTTACCATACACGCCTCGTTCAGGAGCACCAGGAGATGGTCAACCGTCACAGCCTCTGTCTCTCACATCTTCGCGAAGCCAACGAAGAGGCTGAAGCTCTTCTTCGTGAGAACAATCATCTTCGGAGCTTCAACCGGGAGCTAAACGAGCATCTTAGCCAGTTGATCCAACCGTCGGTCCAAAAACAGCTTGGATCACCTGACCATCCGACGCAGTATGATATTGCCGATACTTTTCGTGGTCTTTGTCTAGGGGCAAGAGGCGCGGCGAGCAATTCTTCTTGGGAAGAAGTTTCAGATGATAGCCCATCGTACGTGAAGGAGAGCGGAAGGGTCCAGAATGTTAAGGTGGAGGAGAGATTCTCGCTGCCGAAAAGTATTTCTGTGAGATCGACTGGCTACTTGAAGATGGTTCACGCTCAGGCTGCTTCTATTCATGGTGGACAGTTTCGTAGTGCCACTCACCCTAAAACCGAGCGTTCACTCAAGGTGGCGCAAAAGGTGTATGTGCCGGGAGGGAAGAAACAGGAGGAGCCACTTGAACTGGAGGTGTACAATCAAGGCATGTACAAGACCGAGCTCTGCAACAAATGGCAGGACACCGGAGCTTGCTCGTATGGAGACCACTGCCAGTTTGCTCACGGCATAGAAGAGCTCCGCCCTGTCATCCGTCACCCCCGCTATAAGACCGAGGTCTGCCGGATGGTCCTTGCCGGAATAGTCTGCCCCTATGGTCACCGTTGCCACTTCCGACATGCACTCACCGAGCAAGAGAAGTTGGCCACGCTCAAGAACAACAGCAACATCATCAAGATGGAGAGATAA 954 52.1 MLPRTLQSSNVKQHLLSSLVSYTPYQDSDSDLPVVSAMVVRSHLYHTRLVQEHQEMVNRHSLCLSHLREANEEAEALLRENNHLRSFNRELNEHLSQLIQPSVQKQLGSPDHPTQYDIADTFRGLCLGARGAASNSSWEEVSDDSPSYVKESGRVQNVKVEERFSLPKSISVRSTGYLKMVHAQAASIHGGQFRSATHPKTERSLKVAQKVYVPGGKKQEEPLELEVYNQGMYKTELCNKWQDTGACSYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGIVCPYGHRCHFRHALTEQEKLATLKNNSNIIKMER 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7387829 7389360 - Conep13aG0082300.1 Cone13ag0797 451184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0797 317 FunFam zinc finger CCCH domain-containing protein 15-like 226 265 - -
Cone13ag0797 317 SUPERFAMILY CCCH zinc finger 229 264 IPR036855 GO:0046872(InterPro)
Cone13ag0797 317 SMART c3hfinal6 270 297 IPR000571 GO:0046872(InterPro)
Cone13ag0797 317 SMART c3hfinal6 232 259 IPR000571 GO:0046872(InterPro)
Cone13ag0797 317 FunFam Zinc finger protein 36, C3H1 type-like 1 266 302 - -
Cone13ag0797 317 Gene3D - 226 265 - -
Cone13ag0797 317 Gene3D - 266 302 - -
Cone13ag0797 317 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872(InterPro)
Cone13ag0797 317 Coils Coil 64 87 - -
Cone13ag0797 317 SUPERFAMILY CCCH zinc finger 266 300 IPR036855 GO:0046872(InterPro)
Cone13ag0797 317 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872(InterPro)
Cone13ag0797 317 PANTHER CCCH ZINC FINGER/TIS11-RELATED 36 298 IPR045877 GO:0003729(InterPro)
Cone13ag0797 317 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 258 IPR000571 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0797 K18753 - - csv:101203274 374.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0797 Cone-Chr13:7387829 Cone2ag0453 Cone-Chr2:2422213 2.66E-45 dispersed
Cone13ag0797 Cone-Chr13:7387829 Cone16ag0547 Cone-Chr16:7442960 4.19E-43 wgd
Cone13ag0797 Cone-Chr13:7387829 Cone19ag0802 Cone-Chr19:6446452 2.38E-144 wgd
Cone13ag0797 Cone-Chr13:7387829 Cone2ag0452 Cone-Chr2:2418866 2.66E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44632 PF01554 MatE 3.40E-15 CL0222 Cone TF