Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0803 ATGGAAGCTTTCACTCTGCTTTACCTTCTTCTCTTCCTCTGCAACTCTTATAATCCAGCTGCTTCTTTAAACGGCGAAGGCCTAGCGCTCTTACTTTTCAAGCAGTCGATCAAAGAAGACCCAAACGGGTGTCTAAGCAACTGGAACTCTTCCGATGAAACGCCATGTTTATGGAACGGAATCACATGCGGTAATCAAAGAGTTGTCTCTCTCAGCATTCCGAAGAAGAAACTAAACGGGTTTCTTCATCCTTCTCTCGGATCTCTCTCTGACCTCCGCCATGTAAATTTGAGGAGCAACAAGCTTTACGGAACCTTGCCATCAAAGCTGTTTGAAGCTCAGGGATTACAGAGCTTAGTACTTTTTGGTAATTTATTATCTGGGTCCTTGCCTAATGAAATTGGGAAGCTTACTTATCTTCAAACCTTAGATTTATCACAAAATTTCTTCAATGGGTCGTTACCCACTTCGATTACTCAATGTAGAAGGCTCAAAGCTCTTGATCTTGGTGAAAATAATTTCACTGGTTTTCTGCCAAATGGGTTTGGTGCTAGCTTCAATCTTCTGACAAAACTTGATCTTTCTTTTAATATGTTTAGCGGTTCAATTCCTAGTGATATAGGGAACCTGTCTAGTTTACAAGGCACTGTTGATTTGTCGCATAATCATTTTTCGGGTTCCATCCCAGCTAGTCTTGGAAATCTTCCTGAAAAGGTTTACATTGATCTTACTTACAATAATTTAAGTGGTCCTATACCTCAAAATGGTGCTCTTATGAACAGAGGACCAACTGCGTTTATAGGAAACCCTGGACTCTGTGGGCCCCCATTGAAGAACGCATGTTCTTCGGAAAATCCCGGCGCAAGCTCACCTTCCTCCATTCCTTACCTACCCGATAACCCTCCGCCTGATAACTCTAATGATAATAGTCAAAAGGGTGAGAAAGCAAGAGGGTTAAGTAAAAGTTCTGTTATTGCAATTGTTCTTAGCGATATTATCGGTATATGCCTCATAGGGTTGTTATTCTCATATTGTTACTCAAGGGTGTGTACTGATAGCAAGAGTAAAGATGAAGCTGGATATGGTTTTGAAAAGGGAGGAAGAAAGGGTAGAAAGGAGTGTTTGTGCTTTAGAAAAGATGAATCAGAGACTCTTTCTGAAAATGTGGAGCAATATGATCTTGTGGCGTTGGACAAGAAAGTGGCGTTTGATCTTGATGAGCTTCTTAAGGCGTCGGCTTTTGTTTTAGGAAAAAGTGGGATTGGGATTGTTTACAAGGTTGTGCTTGAAGATGGACTTACCTTAGCGGTGAGAAGGTTAGGCGAAGGTGGTTCTCAAAGGTTTAAGGAATTTCAAACGGAAGTAGAGGCGATTGGAAAGCTTAAGCATCCAAATATTGTAACTCTTCGAGCTTATTATTGGTCGGTAGATGAGAAGCTTCTCATATATGATTATATCCCTAATGGAAACCTTGCCACTGCAATTCACGGGACGCCCGGATCGGAGTCATTTAAGCCATTACCATGGTCTGATCGGCTAAAAATCATGAAAGGCGTTGCGAAAGGATTGACCTATCTGCACGAATTTAGTCCCAAAAAATATGTTCATGGTGACTTGAAGCCAAGCAACATACTTCTTGGATCGAACATGGACCCCTGCATTTCCGATTTCGGCCTTGGTCGTCTTGCTAACATAGCTGGTGGGTCACCCACCCTACAATCCGATCGTGTTGAAAAACCACAAGAAAGGCAGCAGAAGGCTACGAGCTCCGCACTTGCTTCGACGCTTACTTTGTCAGATAATGTGGGGTCGTGCTATCAGGCCCCAGAATCAATGAAAGTGGTGAAACCATCACAGAAGTGGGATGTTTATGCATTTGGTGTGATTCTACTGGAAATGATAACGGGAAGATTACCTGTCATCCAGGTAGGCCCGTCTGAAATGGATATCGTGCATTGGATCCAGCTTTGTATTGAAGAGAAGAAGCCACTTTCAGATGTTTTGGACCCATATTTGTCCCAAGATGCAGATACGGAGACAGATGAGGAGATTATCTCGGTTTTAAGGATTGCTATGGCATGTGTTAGTAATAGTCCTGAAAGGAGACCCCCTATGAGGCATGTATGTGATGCTTTGCACAGGATAGTCATTTGA 2154 42.48 MEAFTLLYLLLFLCNSYNPAASLNGEGLALLLFKQSIKEDPNGCLSNWNSSDETPCLWNGITCGNQRVVSLSIPKKKLNGFLHPSLGSLSDLRHVNLRSNKLYGTLPSKLFEAQGLQSLVLFGNLLSGSLPNEIGKLTYLQTLDLSQNFFNGSLPTSITQCRRLKALDLGENNFTGFLPNGFGASFNLLTKLDLSFNMFSGSIPSDIGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTYNNLSGPIPQNGALMNRGPTAFIGNPGLCGPPLKNACSSENPGASSPSSIPYLPDNPPPDNSNDNSQKGEKARGLSKSSVIAIVLSDIIGICLIGLLFSYCYSRVCTDSKSKDEAGYGFEKGGRKGRKECLCFRKDESETLSENVEQYDLVALDKKVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLKHPNIVTLRAYYWSVDEKLLIYDYIPNGNLATAIHGTPGSESFKPLPWSDRLKIMKGVAKGLTYLHEFSPKKYVHGDLKPSNILLGSNMDPCISDFGLGRLANIAGGSPTLQSDRVEKPQERQQKATSSALASTLTLSDNVGSCYQAPESMKVVKPSQKWDVYAFGVILLEMITGRLPVIQVGPSEMDIVHWIQLCIEEKKPLSDVLDPYLSQDADTETDEEIISVLRIAMACVSNSPERRPPMRHVCDALHRIVI 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7406610 7409694 - Conep13aG0082900.1 Cone13ag0803 451190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0803 717 SMART serkin_6 415 716 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0803 717 SUPERFAMILY Protein kinase-like (PK-like) 415 712 IPR011009 -
Cone13ag0803 717 Gene3D Transferase(Phosphotransferase) domain 1 486 717 - -
Cone13ag0803 717 FunFam Os07g0541700 protein 486 574 - -
Cone13ag0803 717 PANTHER OS05G0588300 PROTEIN 158 715 IPR050994 -
Cone13ag0803 717 Pfam Leucine Rich Repeat 164 183 IPR001611 GO:0005515(InterPro)
Cone13ag0803 717 Pfam Leucine Rich Repeat 217 235 IPR001611 GO:0005515(InterPro)
Cone13ag0803 717 Pfam Leucine Rich Repeat 140 161 IPR001611 GO:0005515(InterPro)
Cone13ag0803 717 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Cone13ag0803 717 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Cone13ag0803 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0803 717 CDD STKc_IRAK 416 715 - -
Cone13ag0803 717 FunFam Leucine-rich repeat receptor-like protein kinase 188 283 - -
Cone13ag0803 717 ProSiteProfiles Protein kinase domain profile. 410 716 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0803 717 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 184 - -
Cone13ag0803 717 Gene3D Phosphorylase Kinase; domain 1 378 485 - -
Cone13ag0803 717 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Cone13ag0803 717 MobiDBLite consensus disorder prediction 570 590 - -
Cone13ag0803 717 Gene3D Ribonuclease Inhibitor 184 283 IPR032675 -
Cone13ag0803 717 MobiDBLite consensus disorder prediction 282 315 - -
Cone13ag0803 717 FunFam Leucine-rich repeat receptor-like protein kinase 393 485 - -
Cone13ag0803 717 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Cone13ag0803 717 Pfam Protein kinase domain 416 709 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0803 717 SUPERFAMILY L domain-like 25 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0803 Cone-Chr13:7406610 Cone13ag1137 Cone-Chr13:9007123 2.78E-120 dispersed
Cone9ag1347 Cone-Chr9:10099847 Cone13ag0803 Cone-Chr13:7406610 4.19E-42 dispersed
Cone13ag0803 Cone-Chr13:7406610 Cone13ag0812 Cone-Chr13:7457178 4.11E-65 proximal
Cone13ag0803 Cone-Chr13:7406610 Cone16ag0554 Cone-Chr16:7466643 2.66E-112 wgd
Cone13ag0803 Cone-Chr13:7406610 Cone19ag0808 Cone-Chr19:6465061 0 wgd
Cone13ag0803 Cone-Chr13:7406610 Cone2ag0444 Cone-Chr2:2392127 6.17E-85 wgd
Cone13ag0803 Cone-Chr13:7406610 Cone6ag0425 Cone-Chr6:2063811 1.20E-237 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82028 PF12796 Ank_2 3.30E-10 CL0465 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0803 - - - 0.0