Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0806 ATGTCCTCTTCAAGACCTAACCAGTCATCTACCAGTTCAAGGCAATCAAGGCACAGCTCTCGGATAATTGCTCAAACAACTGTGGATGCAAAGCTCCATGCCGATTTCGAGGAGTCGGGTACTTCTTTTGACTACTCAAGCTCGGTCCTGGTTACCAGTACCGTTAATGCAGATCAACAACCCAGGTCTGGCAAAGTGACCACAGCTTACCTTCACAACATACAGAAAGGCAAGCTCATCCAACCGTTTGGTTGCTTGCTAGCCTTAGACGAGAAAACTTTCAAGGTAATTGCATACAGTGAGAACGCAAGTGATATGCTGACCATGGTCAGTCATTCTGTTCCAAGTGTAGGAGACCAGCCAGTTCTTGGCATTGGAACGGACATAAAAACCATTTTCACCGCCCCTAGTGCAACAGCATTGCTGAAGGCACTTGGATTTGGGGAGGTTTCACTTTTGAATCCTATCTTAGTTCATTGTAAGAGCTCAGGAAAGCCGTTCTATGCAATCGTGCATAGAGTTACTGGTAGTTTGATTATCGACTTTGAGCCAGTGAAGCTGTATGAGGTTCCCATGACAGCTGTAGGGGCCTTGCAGTCGTACAAGCTCGCAGCCAAAGCAATAACTAAGTTGCAGTCTCTGCCTAGTGGGAACATGACAAGGCTTTGTGATACCATGGTCCAAGAGGTTTTTGAACTCACAGGGTATGATAGGGTGATGGCTTATAAATTTCATGATGATGATCATGGGGAGGTGGTTTCTGAGGTTACAAAACCGGGTCTAGAACCGTATTTGGGGTTGCACTATCCTGCTACTGATATTCCTCAGGCGGCTCGTTTCTTGTTCATGAAGAATAAGGTTCGCATGATTGTTGATTGCCGTGCAAAACACGTGAAGGTAGTACAAGATGGGAATCTCCAGCTTGATCTAACTTTGTGTGGTTCAACCCTAAGGGCCCCACATGGTTGCCATGTACTGTATATGGAGAATATGAATTCCATTGCTTCTCTGGTTATGGCTGTTGTGGTCAATGAAGGGGATGATGAGGGTGGAGATAGCTCTACTTCTGTGCAACCGCAGAAGAGGAAAAGACTTTGGGGTTTAGTCGTATGCCATAACACGACTCCGAGATTTGTACCTTTCCCTCTTAGGTATGCTTGCGAGTTCCTAGCTCAAGTATTTGCTGTTCATGTGAGTAAGGAGATAGAGCTTGAAAGTCAGATAGTAGAGAAAAACATCCTCCGCACACAGACACTCCTTTGTGATATGCTGATGCGAGATGCACCCTTGGGAATTGTGTCACAGAAACCTAGTATAATTGACCTTGTGAAATGCAATGGCGCTGCACTTTTATACAAGAATAAGATATGGAAATTGGGGATTACTCCTAGTGATTTTCAGCTGCAAGGTATTGCCTCATGGCTTGATGAGTACCATATGGATTCAACTGGATTGAGTACAGATAGCTTGTTTGATGCGGGTTATCCAGGGGCTCTTGCTCTTGGTGATGTTGTATGTGGAATGGCTGCTGTCAGAATAACTGCTAACGACTTGATTTTCTGGTTCCGGTCCCACACTGCTACAGAAATCAGGTGGGGTGGTGCAAGGCATGAGCCAGGGAAAATGGATGATGGAAATAAGATGCACCCAAGGTCGTCTTTCAAGGCGTTCCTTGAAGTTGTCAAGACACGGAGTTTACCTTGGAAGGACTATGAAATGGATGCAATACATTCTTTGCAGCTTATTCTTAGGAATGCATTCAAAGATACGGATTATGGTGATTCAAATGGCAAAGCTATTCATGCGAAGCTCAGTGACCTCCGAATTGAAGGGATGCAGGAGTTGGAAACAGTGACAAGTGAGATGGTTCGTCTAATTGAAACAGCTTCAGTACCTATTTTGGCAGTTGATGTAGATGGGGTAGTTAATGGGTGGAATATGAAAATTGCTGAGTTAACTGAACTTCCTGTTGAGAAAGCAATTGGAAAGCATTTGCTCACACTTGTGGAAGATTCTTCAATAGATGTAGTCAAGAGGATGTTATTCTTGGCACTGCAAGGTAAGGAGGAGCAAAACATCCACTTTGAGATCAAAACACATGGGTCTAGGGTTGACTCAGGCCCTATATCCTTAGTTGTGAATGCTTGTGCAAGCAGAGACTTGCAGGAAAACGTTGTGGGAGTATGCTTCGTGGCTCAAGATGTTACCAGTCAGAAGACTGTAATGGACAAGTTCACCCGGATTGAAGGTGATTACAAAGCCATTATACAGAACCCAAGCCCATTGATCCCCCCAATATTTGGCACAGATGAATTTGGCTGGTGCTCAGAATGGAACCTAGCAATGACTAGATTAAGTGGATGGACTCGTGAACAAGTAATAGATAAAATGCTCTTGGGAGAGGTTTTTGGGATCAACAAGGCTTGTTGTCGTGTAAAGAGCCAAGAAGCATTTGTAAATCTTGGCATTGTCCTTAACAATGCAGTTAGTGGTCAAAATCCTGACAAGCTTCCCTTTGGGTTCTTTGCGCGGAATGGGAGATATGTAGAATGTCTGCTTTCCGTGAGTAAGAAGCGGGACAGAGAGGGAGTGGTGACTGGGATTTTCTGCTTCTTACAGCTTGGTAGTCAAGAGCTGCAGCAAGCACTTCATGTCCATAGGTTATCCGAGCAAACTTCTATGAAGAGATTGAAAGAATTAGCGTATATTAAAAGACAGATACGGAATCCTCTATCCGGAATCATATTTTCTAAGAAAATCATGGAGGGTACTGAGTTGGACACTGAACAGAAGCAGCTTCTGCATACTAGTGGACAGTGCCTGCGCCAGATCAGCAAGGTTCTTGATGACTCAGATCTCGATAAGATCCTTGATGGGTTCTTGGATTTGGAAATGGTTCGGTTTACTTTGCATGAAGTGTTGATTGCTTCGATGAGCCAGGCCATGATAAAAAGCAAAGCAAAGGGCATCCAGATAGAAAACGAGGCATCAGAAGAGACTATGACTGAAACCTTGTATGGTGATAGTATTAGGCTTCAACAAGTCTTAGCCGACTTCTTAATAATATCTGTAAATTTTACACCAGTAGGAGGCCGGCTTGTCATTTCGGCCAGTTTGACCAAAAACCAGCTCAGCCAATCTGTGCAGTTGGTGCACCTCGAGCTCAGGATAACACATGCAGGAGGAATACCAGAAACTTTGCTGAACCAGATGTTTGAAAATTATGACGAAGCGTCTGAGGACGGGATAAGTCTCCTAATCAGCAGAAAATTAGTAAAGCTTATGAATGGAGAAGTACAGTGTCTTAGAGAAGCCGGAAAGTCTACTTTCATCATATCCGTCGAGCTTGCTTCTGGTTCTAAGCTGCGGGACTGA 3375 44.21 MSSSRPNQSSTSSRQSRHSSRIIAQTTVDAKLHADFEESGTSFDYSSSVLVTSTVNADQQPRSGKVTTAYLHNIQKGKLIQPFGCLLALDEKTFKVIAYSENASDMLTMVSHSVPSVGDQPVLGIGTDIKTIFTAPSATALLKALGFGEVSLLNPILVHCKSSGKPFYAIVHRVTGSLIIDFEPVKLYEVPMTAVGALQSYKLAAKAITKLQSLPSGNMTRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVVQDGNLQLDLTLCGSTLRAPHGCHVLYMENMNSIASLVMAVVVNEGDDEGGDSSTSVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAVHVSKEIELESQIVEKNILRTQTLLCDMLMRDAPLGIVSQKPSIIDLVKCNGAALLYKNKIWKLGITPSDFQLQGIASWLDEYHMDSTGLSTDSLFDAGYPGALALGDVVCGMAAVRITANDLIFWFRSHTATEIRWGGARHEPGKMDDGNKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDTDYGDSNGKAIHAKLSDLRIEGMQELETVTSEMVRLIETASVPILAVDVDGVVNGWNMKIAELTELPVEKAIGKHLLTLVEDSSIDVVKRMLFLALQGKEEQNIHFEIKTHGSRVDSGPISLVVNACASRDLQENVVGVCFVAQDVTSQKTVMDKFTRIEGDYKAIIQNPSPLIPPIFGTDEFGWCSEWNLAMTRLSGWTREQVIDKMLLGEVFGINKACCRVKSQEAFVNLGIVLNNAVSGQNPDKLPFGFFARNGRYVECLLSVSKKRDREGVVTGIFCFLQLGSQELQQALHVHRLSEQTSMKRLKELAYIKRQIRNPLSGIIFSKKIMEGTELDTEQKQLLHTSGQCLRQISKVLDDSDLDKILDGFLDLEMVRFTLHEVLIASMSQAMIKSKAKGIQIENEASEETMTETLYGDSIRLQQVLADFLIISVNFTPVGGRLVISASLTKNQLSQSVQLVHLELRITHAGGIPETLLNQMFENYDEASEDGISLLISRKLVKLMNGEVQCLREAGKSTFIISVELASGSKLRD 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7423582 7428159 + Conep13aG0083200.1 Cone13ag0806 451193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0806 1124 Gene3D - 199 563 IPR029016 -
Cone13ag0806 1124 Pfam PAS fold 69 185 IPR013654 GO:0006355(InterPro)
Cone13ag0806 1124 FunFam Phytochrome 407 538 - -
Cone13ag0806 1124 FunFam Phytochrome 614 745 - -
Cone13ag0806 1124 SMART HKATPase_4 1007 1118 IPR003594 -
Cone13ag0806 1124 CDD PAS 762 873 IPR000014 -
Cone13ag0806 1124 Gene3D - 407 580 IPR043150 -
Cone13ag0806 1124 PIRSF Phytochrome_conventional 1 1123 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cone13ag0806 1124 NCBIfam PAS domain S-box protein 625 741 IPR000014 -
Cone13ag0806 1124 Gene3D PAS domain 764 878 - -
Cone13ag0806 1124 Pfam His Kinase A (phospho-acceptor) domain 896 956 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone13ag0806 1124 Gene3D - 958 1119 IPR036890 -
Cone13ag0806 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 952 1113 IPR036890 -
Cone13ag0806 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 731 IPR035965 -
Cone13ag0806 1124 Gene3D PAS domain 74 321 - -
Cone13ag0806 1124 ProSiteProfiles PAS repeat profile. 618 688 IPR000014 -
Cone13ag0806 1124 SUPERFAMILY GAF domain-like 198 398 - -
Cone13ag0806 1124 SMART gaf_1 218 412 IPR003018 GO:0005515(InterPro)
Cone13ag0806 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Cone13ag0806 1124 CDD HisKA 900 950 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone13ag0806 1124 ProSiteProfiles Histidine kinase domain profile. 902 1118 IPR005467 -
Cone13ag0806 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 392 IPR016132 -
Cone13ag0806 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 871 IPR035965 -
Cone13ag0806 1124 Pfam Phytochrome region 415 589 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 SMART HisKA_10 895 959 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone13ag0806 1124 Pfam PAS fold 621 735 IPR013767 GO:0006355(InterPro)
Cone13ag0806 1124 Pfam PAS fold 751 873 IPR013767 GO:0006355(InterPro)
Cone13ag0806 1124 PANTHER OS08G0260000 PROTEIN 1 996 - -
Cone13ag0806 1124 Gene3D PAS domain 612 749 - -
Cone13ag0806 1124 PRINTS Phytochrome signature 640 655 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 PRINTS Phytochrome signature 621 637 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 PRINTS Phytochrome signature 517 536 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 PRINTS Phytochrome signature 550 568 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone13ag0806 1124 ProSiteProfiles PAS repeat profile. 748 803 IPR000014 -
Cone13ag0806 1124 CDD PAS 629 735 IPR000014 -
Cone13ag0806 1124 MobiDBLite consensus disorder prediction 1 23 - -
Cone13ag0806 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1116 IPR003594 -
Cone13ag0806 1124 SUPERFAMILY GAF domain-like 410 587 - -
Cone13ag0806 1124 SMART pas_2 750 819 IPR000014 -
Cone13ag0806 1124 SMART pas_2 620 686 IPR000014 -
Cone13ag0806 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 185 IPR035965 -
Cone13ag0806 1124 Pfam GAF domain 219 402 IPR003018 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0806 K12120 - - vvi:100240824 1830.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1314 Cone-Chr12:9931224 Cone13ag0806 Cone-Chr13:7423582 0 dispersed
Cone13ag0806 Cone-Chr13:7423582 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone13ag0806 Cone-Chr13:7423582 Cone19ag0812 Cone-Chr19:6479343 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0858 . 19 1108 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1384.4
Cone12ag0821 . 1 1107 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1382.5
Cone6ag0342 . 23 1008 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1354.0
Cone9ag0376 . 23 1002 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.6
Cone12ag1329 . 264 1193 Histidine Kinase Gene Family AT2G01830 54.7 4.3e-282 968.4
Cone15ag0619 . 88 1043 Histidine Kinase Gene Family AT2G01830 54.4 2.8e-281 965.7
Cone14ag0613 . 88 1042 Histidine Kinase Gene Family AT2G01830 54.2 6.2e-281 964.5
Cone8ag1386 . 265 1191 Histidine Kinase Gene Family AT2G01830 54.3 9.8e-279 957.2
Cone4ag1716 . 1 1005 Histidine Kinase Gene Family AT5G10720 56.9 1.7e-290 996.1
Cone7ag1634 . 1 1007 Histidine Kinase Gene Family AT5G10720 56.1 1.4e-284 976.5
Cone13ag0806 . 1 1121 Histidine Kinase Gene Family AT1G09570 77.6 0.0e+00 1767.7
Cone19ag0812 . 1 1108 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1748.4
Cone12ag1314 . 21 1122 Histidine Kinase Gene Family AT1G09570 57.3 0.0e+00 1277.3
Cone8ag1368 . 35 1132 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1267.3
Cone14ag0717 . 31 1119 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1177.9
Cone15ag0729 . 31 951 Histidine Kinase Gene Family AT1G09570 56.0 1.7e-305 1046.2
Cone14ag0717 . 5 1060 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1662.5
Cone15ag0729 . 10 966 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1515.7
Cone8ag1368 . 45 1072 Histidine Kinase Gene Family AT2G18790 54.6 0.0e+00 1113.2
Cone12ag1314 . 33 1062 Histidine Kinase Gene Family AT2G18790 55.0 0.0e+00 1112.1
Cone13ag0806 . 20 1056 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1076.6
Cone19ag0812 . 20 1043 Histidine Kinase Gene Family AT2G18790 51.6 7.2e-312 1067.4
Cone12ag1314 . 19 1126 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1410.6
Cone8ag1368 . 29 1136 Histidine Kinase Gene Family AT5G35840 62.9 0.0e+00 1409.0
Cone14ag0717 . 13 1121 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1127.5
Cone13ag0806 . 7 1115 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1106.3
Cone19ag0812 . 7 1102 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1103.2
Cone15ag0729 . 13 951 Histidine Kinase Gene Family AT5G35840 54.3 2.7e-295 1012.3
Cone14ag0717 . 8 1121 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1692.6
Cone15ag0729 . 8 971 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1467.6
Cone12ag1314 . 33 1125 Histidine Kinase Gene Family AT4G16250 53.8 0.0e+00 1151.7
Cone8ag1368 . 45 1135 Histidine Kinase Gene Family AT4G16250 53.5 0.0e+00 1150.6
Cone13ag0806 . 19 1116 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.6
Cone19ag0812 . 19 1103 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1107.4
Cone14ag0717 . 12 1119 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1272.7
Cone15ag0729 . 12 949 Histidine Kinase Gene Family AT4G18130 60.8 0.0e+00 1108.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56