Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone13ag0806 | ATGTCCTCTTCAAGACCTAACCAGTCATCTACCAGTTCAAGGCAATCAAGGCACAGCTCTCGGATAATTGCTCAAACAACTGTGGATGCAAAGCTCCATGCCGATTTCGAGGAGTCGGGTACTTCTTTTGACTACTCAAGCTCGGTCCTGGTTACCAGTACCGTTAATGCAGATCAACAACCCAGGTCTGGCAAAGTGACCACAGCTTACCTTCACAACATACAGAAAGGCAAGCTCATCCAACCGTTTGGTTGCTTGCTAGCCTTAGACGAGAAAACTTTCAAGGTAATTGCATACAGTGAGAACGCAAGTGATATGCTGACCATGGTCAGTCATTCTGTTCCAAGTGTAGGAGACCAGCCAGTTCTTGGCATTGGAACGGACATAAAAACCATTTTCACCGCCCCTAGTGCAACAGCATTGCTGAAGGCACTTGGATTTGGGGAGGTTTCACTTTTGAATCCTATCTTAGTTCATTGTAAGAGCTCAGGAAAGCCGTTCTATGCAATCGTGCATAGAGTTACTGGTAGTTTGATTATCGACTTTGAGCCAGTGAAGCTGTATGAGGTTCCCATGACAGCTGTAGGGGCCTTGCAGTCGTACAAGCTCGCAGCCAAAGCAATAACTAAGTTGCAGTCTCTGCCTAGTGGGAACATGACAAGGCTTTGTGATACCATGGTCCAAGAGGTTTTTGAACTCACAGGGTATGATAGGGTGATGGCTTATAAATTTCATGATGATGATCATGGGGAGGTGGTTTCTGAGGTTACAAAACCGGGTCTAGAACCGTATTTGGGGTTGCACTATCCTGCTACTGATATTCCTCAGGCGGCTCGTTTCTTGTTCATGAAGAATAAGGTTCGCATGATTGTTGATTGCCGTGCAAAACACGTGAAGGTAGTACAAGATGGGAATCTCCAGCTTGATCTAACTTTGTGTGGTTCAACCCTAAGGGCCCCACATGGTTGCCATGTACTGTATATGGAGAATATGAATTCCATTGCTTCTCTGGTTATGGCTGTTGTGGTCAATGAAGGGGATGATGAGGGTGGAGATAGCTCTACTTCTGTGCAACCGCAGAAGAGGAAAAGACTTTGGGGTTTAGTCGTATGCCATAACACGACTCCGAGATTTGTACCTTTCCCTCTTAGGTATGCTTGCGAGTTCCTAGCTCAAGTATTTGCTGTTCATGTGAGTAAGGAGATAGAGCTTGAAAGTCAGATAGTAGAGAAAAACATCCTCCGCACACAGACACTCCTTTGTGATATGCTGATGCGAGATGCACCCTTGGGAATTGTGTCACAGAAACCTAGTATAATTGACCTTGTGAAATGCAATGGCGCTGCACTTTTATACAAGAATAAGATATGGAAATTGGGGATTACTCCTAGTGATTTTCAGCTGCAAGGTATTGCCTCATGGCTTGATGAGTACCATATGGATTCAACTGGATTGAGTACAGATAGCTTGTTTGATGCGGGTTATCCAGGGGCTCTTGCTCTTGGTGATGTTGTATGTGGAATGGCTGCTGTCAGAATAACTGCTAACGACTTGATTTTCTGGTTCCGGTCCCACACTGCTACAGAAATCAGGTGGGGTGGTGCAAGGCATGAGCCAGGGAAAATGGATGATGGAAATAAGATGCACCCAAGGTCGTCTTTCAAGGCGTTCCTTGAAGTTGTCAAGACACGGAGTTTACCTTGGAAGGACTATGAAATGGATGCAATACATTCTTTGCAGCTTATTCTTAGGAATGCATTCAAAGATACGGATTATGGTGATTCAAATGGCAAAGCTATTCATGCGAAGCTCAGTGACCTCCGAATTGAAGGGATGCAGGAGTTGGAAACAGTGACAAGTGAGATGGTTCGTCTAATTGAAACAGCTTCAGTACCTATTTTGGCAGTTGATGTAGATGGGGTAGTTAATGGGTGGAATATGAAAATTGCTGAGTTAACTGAACTTCCTGTTGAGAAAGCAATTGGAAAGCATTTGCTCACACTTGTGGAAGATTCTTCAATAGATGTAGTCAAGAGGATGTTATTCTTGGCACTGCAAGGTAAGGAGGAGCAAAACATCCACTTTGAGATCAAAACACATGGGTCTAGGGTTGACTCAGGCCCTATATCCTTAGTTGTGAATGCTTGTGCAAGCAGAGACTTGCAGGAAAACGTTGTGGGAGTATGCTTCGTGGCTCAAGATGTTACCAGTCAGAAGACTGTAATGGACAAGTTCACCCGGATTGAAGGTGATTACAAAGCCATTATACAGAACCCAAGCCCATTGATCCCCCCAATATTTGGCACAGATGAATTTGGCTGGTGCTCAGAATGGAACCTAGCAATGACTAGATTAAGTGGATGGACTCGTGAACAAGTAATAGATAAAATGCTCTTGGGAGAGGTTTTTGGGATCAACAAGGCTTGTTGTCGTGTAAAGAGCCAAGAAGCATTTGTAAATCTTGGCATTGTCCTTAACAATGCAGTTAGTGGTCAAAATCCTGACAAGCTTCCCTTTGGGTTCTTTGCGCGGAATGGGAGATATGTAGAATGTCTGCTTTCCGTGAGTAAGAAGCGGGACAGAGAGGGAGTGGTGACTGGGATTTTCTGCTTCTTACAGCTTGGTAGTCAAGAGCTGCAGCAAGCACTTCATGTCCATAGGTTATCCGAGCAAACTTCTATGAAGAGATTGAAAGAATTAGCGTATATTAAAAGACAGATACGGAATCCTCTATCCGGAATCATATTTTCTAAGAAAATCATGGAGGGTACTGAGTTGGACACTGAACAGAAGCAGCTTCTGCATACTAGTGGACAGTGCCTGCGCCAGATCAGCAAGGTTCTTGATGACTCAGATCTCGATAAGATCCTTGATGGGTTCTTGGATTTGGAAATGGTTCGGTTTACTTTGCATGAAGTGTTGATTGCTTCGATGAGCCAGGCCATGATAAAAAGCAAAGCAAAGGGCATCCAGATAGAAAACGAGGCATCAGAAGAGACTATGACTGAAACCTTGTATGGTGATAGTATTAGGCTTCAACAAGTCTTAGCCGACTTCTTAATAATATCTGTAAATTTTACACCAGTAGGAGGCCGGCTTGTCATTTCGGCCAGTTTGACCAAAAACCAGCTCAGCCAATCTGTGCAGTTGGTGCACCTCGAGCTCAGGATAACACATGCAGGAGGAATACCAGAAACTTTGCTGAACCAGATGTTTGAAAATTATGACGAAGCGTCTGAGGACGGGATAAGTCTCCTAATCAGCAGAAAATTAGTAAAGCTTATGAATGGAGAAGTACAGTGTCTTAGAGAAGCCGGAAAGTCTACTTTCATCATATCCGTCGAGCTTGCTTCTGGTTCTAAGCTGCGGGACTGA | 3375 | 44.21 | MSSSRPNQSSTSSRQSRHSSRIIAQTTVDAKLHADFEESGTSFDYSSSVLVTSTVNADQQPRSGKVTTAYLHNIQKGKLIQPFGCLLALDEKTFKVIAYSENASDMLTMVSHSVPSVGDQPVLGIGTDIKTIFTAPSATALLKALGFGEVSLLNPILVHCKSSGKPFYAIVHRVTGSLIIDFEPVKLYEVPMTAVGALQSYKLAAKAITKLQSLPSGNMTRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVVQDGNLQLDLTLCGSTLRAPHGCHVLYMENMNSIASLVMAVVVNEGDDEGGDSSTSVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAVHVSKEIELESQIVEKNILRTQTLLCDMLMRDAPLGIVSQKPSIIDLVKCNGAALLYKNKIWKLGITPSDFQLQGIASWLDEYHMDSTGLSTDSLFDAGYPGALALGDVVCGMAAVRITANDLIFWFRSHTATEIRWGGARHEPGKMDDGNKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDTDYGDSNGKAIHAKLSDLRIEGMQELETVTSEMVRLIETASVPILAVDVDGVVNGWNMKIAELTELPVEKAIGKHLLTLVEDSSIDVVKRMLFLALQGKEEQNIHFEIKTHGSRVDSGPISLVVNACASRDLQENVVGVCFVAQDVTSQKTVMDKFTRIEGDYKAIIQNPSPLIPPIFGTDEFGWCSEWNLAMTRLSGWTREQVIDKMLLGEVFGINKACCRVKSQEAFVNLGIVLNNAVSGQNPDKLPFGFFARNGRYVECLLSVSKKRDREGVVTGIFCFLQLGSQELQQALHVHRLSEQTSMKRLKELAYIKRQIRNPLSGIIFSKKIMEGTELDTEQKQLLHTSGQCLRQISKVLDDSDLDKILDGFLDLEMVRFTLHEVLIASMSQAMIKSKAKGIQIENEASEETMTETLYGDSIRLQQVLADFLIISVNFTPVGGRLVISASLTKNQLSQSVQLVHLELRITHAGGIPETLLNQMFENYDEASEDGISLLISRKLVKLMNGEVQCLREAGKSTFIISVELASGSKLRD | 1124 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7423582 | 7428159 | + | Conep13aG0083200.1 | Cone13ag0806 | 451193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone13ag0806 | 1124 | Gene3D | - | 199 | 563 | IPR029016 | - | |
| Cone13ag0806 | 1124 | Pfam | PAS fold | 69 | 185 | IPR013654 | GO:0006355(InterPro) | |
| Cone13ag0806 | 1124 | FunFam | Phytochrome | 407 | 538 | - | - | |
| Cone13ag0806 | 1124 | FunFam | Phytochrome | 614 | 745 | - | - | |
| Cone13ag0806 | 1124 | SMART | HKATPase_4 | 1007 | 1118 | IPR003594 | - | |
| Cone13ag0806 | 1124 | CDD | PAS | 762 | 873 | IPR000014 | - | |
| Cone13ag0806 | 1124 | Gene3D | - | 407 | 580 | IPR043150 | - | |
| Cone13ag0806 | 1124 | PIRSF | Phytochrome_conventional | 1 | 1123 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Cone13ag0806 | 1124 | NCBIfam | PAS domain S-box protein | 625 | 741 | IPR000014 | - | |
| Cone13ag0806 | 1124 | Gene3D | PAS domain | 764 | 878 | - | - | |
| Cone13ag0806 | 1124 | Pfam | His Kinase A (phospho-acceptor) domain | 896 | 956 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone13ag0806 | 1124 | Gene3D | - | 958 | 1119 | IPR036890 | - | |
| Cone13ag0806 | 1124 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 952 | 1113 | IPR036890 | - | |
| Cone13ag0806 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 624 | 731 | IPR035965 | - | |
| Cone13ag0806 | 1124 | Gene3D | PAS domain | 74 | 321 | - | - | |
| Cone13ag0806 | 1124 | ProSiteProfiles | PAS repeat profile. | 618 | 688 | IPR000014 | - | |
| Cone13ag0806 | 1124 | SUPERFAMILY | GAF domain-like | 198 | 398 | - | - | |
| Cone13ag0806 | 1124 | SMART | gaf_1 | 218 | 412 | IPR003018 | GO:0005515(InterPro) | |
| Cone13ag0806 | 1124 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 318 | 327 | IPR013516 | - | |
| Cone13ag0806 | 1124 | CDD | HisKA | 900 | 950 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone13ag0806 | 1124 | ProSiteProfiles | Histidine kinase domain profile. | 902 | 1118 | IPR005467 | - | |
| Cone13ag0806 | 1124 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 218 | 392 | IPR016132 | - | |
| Cone13ag0806 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 765 | 871 | IPR035965 | - | |
| Cone13ag0806 | 1124 | Pfam | Phytochrome region | 415 | 589 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | SMART | HisKA_10 | 895 | 959 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone13ag0806 | 1124 | Pfam | PAS fold | 621 | 735 | IPR013767 | GO:0006355(InterPro) | |
| Cone13ag0806 | 1124 | Pfam | PAS fold | 751 | 873 | IPR013767 | GO:0006355(InterPro) | |
| Cone13ag0806 | 1124 | PANTHER | OS08G0260000 PROTEIN | 1 | 996 | - | - | |
| Cone13ag0806 | 1124 | Gene3D | PAS domain | 612 | 749 | - | - | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 640 | 655 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 713 | 730 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 621 | 637 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 318 | 339 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 733 | 753 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 517 | 536 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 233 | 252 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 432 | 452 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 550 | 568 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | PRINTS | Phytochrome signature | 133 | 155 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone13ag0806 | 1124 | ProSiteProfiles | PAS repeat profile. | 748 | 803 | IPR000014 | - | |
| Cone13ag0806 | 1124 | CDD | PAS | 629 | 735 | IPR000014 | - | |
| Cone13ag0806 | 1124 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cone13ag0806 | 1124 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1007 | 1116 | IPR003594 | - | |
| Cone13ag0806 | 1124 | SUPERFAMILY | GAF domain-like | 410 | 587 | - | - | |
| Cone13ag0806 | 1124 | SMART | pas_2 | 750 | 819 | IPR000014 | - | |
| Cone13ag0806 | 1124 | SMART | pas_2 | 620 | 686 | IPR000014 | - | |
| Cone13ag0806 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 74 | 185 | IPR035965 | - | |
| Cone13ag0806 | 1124 | Pfam | GAF domain | 219 | 402 | IPR003018 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag1314 | Cone-Chr12:9931224 | Cone13ag0806 | Cone-Chr13:7423582 | 0 | dispersed | |
| Cone13ag0806 | Cone-Chr13:7423582 | Cone8ag1368 | Cone-Chr8:10914209 | 0 | dispersed | |
| Cone13ag0806 | Cone-Chr13:7423582 | Cone19ag0812 | Cone-Chr19:6479343 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone13ag0806 | K12120 | - | vvi:100240824 | 1830.07 |