Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0812 ATGGCGAAAGGCGTTCTTCTCTTCTTCACAAATTTTGTTTTCGCGTTCCTTTTCCTCCATTTCTGCCACCTCCAAGCAGATTCTTCTTCTAATCCAGATTTCGAGCCATTAATGGAGTTCAGAGCATCTTCCGACGCAGACAAAAAGCTCACCGCCTGGAACTCAACCTCCGACACATGCACCTGGACCGGAGTGACCTGTCTAAGAAACCGAGTCTCCAGACTCGTTCTCGAAAACCTCGGCTTAACCGGTTCAATCGAACTGCTTACGTCTCTAACCCAGCTTCGAGTTTTAAGCCTCAAGAACAACAAACTCTCCGGCCCCATTCCCGACCTTTCCAACTTCACATCCCTAAAGCTCTTGTTTCTCTCACACAATGACTTTTCCGGCGATTTTCCGGCCTCCGTCACCTCTTTCTTCCGTCTCTACCGTCTCGATCTATCCTACAACAACTTTTCTGGCCAGATTCCTGTCACAGTCAACCGTTTGAGTCACCTCCTAACCCTCCGGCTCGAATCGAACCGGTTCACTGGTCCGATATCAAACCTCAACTTCCCGAACCTTCAAGACCTCAATGTGACTGGAAACCGCCTCTCTGGTCAAATCCCCAAGTCCCTATCTGGTTTTTCCGACTCATCTTTCGGGCAAAATCCGGCTCTGTGCGGGTCCCCGTTACCCGCCTGCAAAAGCCTAGAAACTGACCCGACTAAACCCGGTTCCGACGGAGCAGCCATAGCTTCACCCGTCGTATCTTCTCCAAGCTCACTCCCTAACATCACATCACCAAAAAAACCGTCGAGTCCACGTCACCATAACACGTCAGCAAAGATTACCCCTTTAGCCCTGATTGCCATAATCCTTGGCGATATATTAGTCCTCGCCGTCGTCTCCCTTCTCCTCTACTGCTACTTCCGGAAAAACTCCACCGCCTCCAAGAGTGGACCCCACGACAAGGGCCCCACGTCGAAGCCGCTCTCCGAGAGCGAGAAGATCGTCTACTCGTCGAGCCCGTATGGCGGGACCCAGCCGGGGTTTGAACGGGGTCAGATGGTGTTCTTCGAGGGGGTGAAGAGATTCGAGCTGGAGGACTTGCTTCGAGCATCGGCTGAGATGCTCGGTAAAGGTGGGTTCGGGACGGCGTATAAGGCGGTGCTGGACGATGGGAATGTGGTGGCGGTGAAGAGATTGAAAGATGCTCAGATTGGTGGGAAGAGAGAGTTTGAACAGCATATGGAGATTTTAGGGAAATTGAGTCATCAGAATATTGTTAGCTTGAGAGCTTATTATTTTGCCAGAGAAGAGAAGCTTTTGGTCTATGATTTCATGCCTAATGGAAGCTTGTTCTGGCTTCTTCACGGTAATCGAGGTCCAGGAAGAACCCCACTGGATTGGACAACTCGGCTTAGAATCGCATCTGGAGCGGCTCGAGGCTTAGCTTTTATCCACAACTCATGCAAGTCCCTTAGACTCACCCACGGTAACATCAAATCCACAAACATCCTCCTTGACCGAGCGGGCAATGCACGAGTATCTGACTTCGGACTATCTGTTTTTGCCCACCCGTCCACCTCCTCTCCACGATCCAGTGGCTACCGTGCTCCCGAATCATCCGATAGTCGAAAGCTGACTCAGAAATCGGATGTGTACTCTTTCGGTGTTCTCCTGTTGGAGATGCTAACGGGGAAGTGCCCTTCTGTTGTGGATAATGTTGGGCCAGGGAATGGGTATGGTGGTGGGGTCATGGACCTACCTAGGTGGGTACAGTCTGTGGTCAGAGAGGAATGGACGGCTGAGGTTTTCGATTTGGAGTTGATGAGGTATAAGGATATTGAGGAGGAGATGGTGAGGATGTTGCAAATAGCTATGGCTTGTACTTCTGCTAGTCCTGATCAACGGCCAAGAATGAGCCAGGTGGTCAAGATGATCCAGGAGATTCGTGGGGTCGAGACAGATGGGTTTGACTCAGTGTCTGATTCGCCGTCCATGTCAGATGACACGCGTCGTGCGGAGCCCATTAGTGATCAGTGA 2028 51.13 MAKGVLLFFTNFVFAFLFLHFCHLQADSSSNPDFEPLMEFRASSDADKKLTAWNSTSDTCTWTGVTCLRNRVSRLVLENLGLTGSIELLTSLTQLRVLSLKNNKLSGPIPDLSNFTSLKLLFLSHNDFSGDFPASVTSFFRLYRLDLSYNNFSGQIPVTVNRLSHLLTLRLESNRFTGPISNLNFPNLQDLNVTGNRLSGQIPKSLSGFSDSSFGQNPALCGSPLPACKSLETDPTKPGSDGAAIASPVVSSPSSLPNITSPKKPSSPRHHNTSAKITPLALIAIILGDILVLAVVSLLLYCYFRKNSTASKSGPHDKGPTSKPLSESEKIVYSSSPYGGTQPGFERGQMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIGGKREFEQHMEILGKLSHQNIVSLRAYYFAREEKLLVYDFMPNGSLFWLLHGNRGPGRTPLDWTTRLRIASGAARGLAFIHNSCKSLRLTHGNIKSTNILLDRAGNARVSDFGLSVFAHPSTSSPRSSGYRAPESSDSRKLTQKSDVYSFGVLLLEMLTGKCPSVVDNVGPGNGYGGGVMDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVRMLQIAMACTSASPDQRPRMSQVVKMIQEIRGVETDGFDSVSDSPSMSDDTRRAEPISDQ 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7457178 7460276 + Conep13aG0083800.1 Cone13ag0812 451199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0812 675 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Cone13ag0812 675 SUPERFAMILY L domain-like 52 222 - -
Cone13ag0812 675 ProSiteProfiles Protein kinase domain profile. 366 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0812 675 Gene3D Transferase(Phosphotransferase) domain 1 442 662 - -
Cone13ag0812 675 CDD STKc_IRAK 372 645 - -
Cone13ag0812 675 SUPERFAMILY Protein kinase-like (PK-like) 370 642 IPR011009 -
Cone13ag0812 675 MobiDBLite consensus disorder prediction 231 273 - -
Cone13ag0812 675 Gene3D Ribonuclease Inhibitor 23 89 IPR032675 -
Cone13ag0812 675 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524(InterPro)
Cone13ag0812 675 MobiDBLite consensus disorder prediction 520 537 - -
Cone13ag0812 675 Gene3D Phosphorylase Kinase; domain 1 346 441 - -
Cone13ag0812 675 Pfam Leucine Rich Repeat 142 161 IPR001611 GO:0005515(InterPro)
Cone13ag0812 675 Pfam Leucine Rich Repeat 94 111 IPR001611 GO:0005515(InterPro)
Cone13ag0812 675 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515(InterPro)
Cone13ag0812 675 MobiDBLite consensus disorder prediction 661 675 - -
Cone13ag0812 675 MobiDBLite consensus disorder prediction 520 539 - -
Cone13ag0812 675 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 442 653 - -
Cone13ag0812 675 MobiDBLite consensus disorder prediction 649 675 - -
Cone13ag0812 675 PANTHER OS05G0588300 PROTEIN 13 654 IPR050994 -
Cone13ag0812 675 FunFam Nuclear pore complex protein NUP107 30 182 - -
Cone13ag0812 675 Pfam Protein tyrosine and serine/threonine kinase 370 641 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0812 675 MobiDBLite consensus disorder prediction 247 273 - -
Cone13ag0812 675 Gene3D Ribonuclease Inhibitor 90 235 IPR032675 -
Cone13ag0812 675 FunFam pollen receptor-like kinase 1 339 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0190 Cone-Chr10:933889 Cone13ag0812 Cone-Chr13:7457178 1.55E-117 dispersed
Cone13ag0812 Cone-Chr13:7457178 Cone19ag1206 Cone-Chr19:8418148 3.98E-124 dispersed
Cone2ag0892 Cone-Chr2:34794483 Cone13ag0812 Cone-Chr13:7457178 2.72E-55 dispersed
Cone6ag1421 Cone-Chr6:11390191 Cone13ag0812 Cone-Chr13:7457178 4.91E-49 dispersed
Cone8ag0145 Cone-Chr8:757781 Cone13ag0812 Cone-Chr13:7457178 5.66E-47 dispersed
Cone13ag0803 Cone-Chr13:7406610 Cone13ag0812 Cone-Chr13:7457178 4.11E-65 proximal
Cone13ag0812 Cone-Chr13:7457178 Cone19ag0818 Cone-Chr19:6511086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82032 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0812 - - - 0.0