Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0829 ATGAGGATGAGTTGCAATGGCTGCAGAGTTCTCCGCAAAGGCTGCACCGATGACTGTGTCATCCGACCCTGCCTCCACTGGCTTCCGTCCTCTGATTATCAAGCCAACGCCACCCTTTTCCTCGCCAAGTTCTATGGCCGTGCTGGCCTCCTCAACCTCCTCACCGCAGGCCCCGAATACCGTCGTCCCGAGATTTTCAAGTCACTGCTACATGAGGCTTGTGGGCGGATCGTGAATCCGGTTTACGGTGCTTTGGGTTTGCTCTCGGCTGGAAAGTGGGACCGATGTCAATCTGCGGTTGATGCGGTGATCATGGGACTGACAATCACGGCTGACGACAACATTGACGACGATGCACCTTCACCGCAAGCTAACTTTTTTCTCAGAAACGGAGACATTCGCCATGCGATGAAGGAGGTCGGCTTGGCTAATAAGACTCCGAACAAGAAGGCGAGACGGTCTCGAGCTACGTTGGGTGATGATGTGGCTGGCTCTGGTAATACTGGGTGGGCCTGGCTTTCCCCTGAGGATTTCATTCGGGGCATGACATTGGGGATGGGCCGAAATCAAGAAGAGACCATGCTTTTTGCTGAAACCATGGGGGATGCATTAGCCAACCGGTGCAAGCCGGACCGTGTCTTAAAGTTATTCGACGATGGGTTGGACTTGACTCTTGGATAG 681 53.89 MRMSCNGCRVLRKGCTDDCVIRPCLHWLPSSDYQANATLFLAKFYGRAGLLNLLTAGPEYRRPEIFKSLLHEACGRIVNPVYGALGLLSAGKWDRCQSAVDAVIMGLTITADDNIDDDAPSPQANFFLRNGDIRHAMKEVGLANKTPNKKARRSRATLGDDVAGSGNTGWAWLSPEDFIRGMTLGMGRNQEETMLFAETMGDALANRCKPDRVLKLFDDGLDLTLG 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7525201 7526001 + Conep13aG0085500.1 Cone13ag0829 451216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0829 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 153 - GO:0010468(PANTHER)
Cone13ag0829 226 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cone13ag0829 226 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0829 Cone-Chr13:7525201 Cone19ag0280 Cone-Chr19:2004222 1.20E-52 dispersed
Cone11ag0317 Cone-Chr11:1550023 Cone13ag0829 Cone-Chr13:7525201 3.50E-52 wgd
Cone13ag0829 Cone-Chr13:7525201 Cone19ag0834 Cone-Chr19:6592100 7.08E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44636 PF07479 NAD_Gly3P_dh_C 2.20E-24 CL0106 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0829 - - - 0.0