Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0836 ATGAAGATTTTCGTGAAGACTCTTAAAGGCACTCACTTCGAGGTTGAAGTTCAGCCTGAAGACACGGTTGCTGATGTGAAGAAAAATATAGAATCTGTTCAGGGTGCTGATATTTATCCTGCTACCCAGCAGATGCTTATCCATCAAGGGAAAGTCCTTAAAGATAGCACAACACTGAAAGAAAACAGTGTTGCAGAGAATAGTTTTATTGTCATCATGTTAACAAAGAGCAAGAGTTCATCTGGTGAGGCTTCAACTGCACAAGCTGCACCTGTGACTAAGGCTCCAACTACCAGTGCCCCTCCTGCTCCCACCCCAGCTTCAGCAGTACCGCAGACTCCCATAACCTCTGCCTCTAACAGGCCTGCTCCCTCTCCTCCTATTCCTGCCCCTATTCCGGTTGCTGTTCCGACTTCTTCACCTACTGCAGTGTCGGAGCCTGATGTATACAGCCAAGCCGCATCTAATCTGGTTGCTGGTAGCAACCTTGACCAGACCGTCCAGCAGATTCTTGATATGGGTGGGGGAACTTGGGATAGAGAAACGGTCATTCGTGCCCTTCGTGCTGCTTTCAACAATCCGGAGAGAGCTGTTGAATATCTTTATTCTGGTATCCCTGAGCAAGCTGAAGTTCCAGCCCAGCCTCCACAGTCAACCCAACCTGTACCTGTTCCATCAAGTGGCCCAAATGCTAATCCTCTGGACCTCTTCCCCCAGGGAATTCCAGATGCAGGCACCAGGGCTGCCGGAGCAGGAACTCTTGATTTCCTTCGCCAGAGTCAGCAGTTCCAGGCCTTACGAAGCATGGTGCAGGCAAATCCACAGATATTGCAGCCCATGCTCCAAGAGCTAGGAAAACAAAACCCGCACCTTATGAGGCTAATTCAAGAGCACCAGGCTGACTTTCTTCGCCTAATCAATGAACCTGTTGAAAGAGGAGAGGGGAACGTTCTAGGGCAACTTGCTGCAGGAATGCCACAGGCAATATCGGTAACCCCTGAGGAGCGTGAAGCCATTGAACGGCTCGAAGCAATGGGGTTTGATAGAGCCATTGTGTTAGAGGTTTTCTTTGCCTGCAACAAAAACGAGGAGCTTGCTGCTAACTATCTCCTAGATCATATGCATGAATTCGAGGAATGA 1140 49.21 MKIFVKTLKGTHFEVEVQPEDTVADVKKNIESVQGADIYPATQQMLIHQGKVLKDSTTLKENSVAENSFIVIMLTKSKSSSGEASTAQAAPVTKAPTTSAPPAPTPASAVPQTPITSASNRPAPSPPIPAPIPVAVPTSSPTAVSEPDVYSQAASNLVAGSNLDQTVQQILDMGGGTWDRETVIRALRAAFNNPERAVEYLYSGIPEQAEVPAQPPQSTQPVPVPSSGPNANPLDLFPQGIPDAGTRAAGAGTLDFLRQSQQFQALRSMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVERGEGNVLGQLAAGMPQAISVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFEE 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7561861 7567054 + Conep13aG0086200.1 Cone13ag0836 451223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0836 379 CDD Ubl_Rad23 1 74 - -
Cone13ag0836 379 SMART ubq_7 1 75 IPR000626 GO:0005515(InterPro)
Cone13ag0836 379 FunFam UV excision repair protein RAD23 homolog 326 374 - -
Cone13ag0836 379 FunFam UV excision repair protein RAD23 1 80 - -
Cone13ag0836 379 CDD UBA2_RAD23_plant 331 373 - -
Cone13ag0836 379 MobiDBLite consensus disorder prediction 80 95 - -
Cone13ag0836 379 FunFam UV excision repair protein RAD23 B 244 310 - -
Cone13ag0836 379 Gene3D - 327 374 - -
Cone13ag0836 379 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 371 - GO:0005654(PANTHER)|GO:0005829(PANTHER)|GO:0031593(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0070628(PANTHER)
Cone13ag0836 379 PRINTS DNA repair protein Rad23 signature 280 302 IPR004806 GO:0006289(InterPro)
Cone13ag0836 379 PRINTS DNA repair protein Rad23 signature 361 376 IPR004806 GO:0006289(InterPro)
Cone13ag0836 379 PRINTS DNA repair protein Rad23 signature 329 345 IPR004806 GO:0006289(InterPro)
Cone13ag0836 379 PRINTS DNA repair protein Rad23 signature 346 360 IPR004806 GO:0006289(InterPro)
Cone13ag0836 379 SMART uba_6 335 372 IPR015940 -
Cone13ag0836 379 SMART uba_6 163 203 IPR015940 -
Cone13ag0836 379 SMART CBM 252 295 IPR006636 -
Cone13ag0836 379 Pfam XPC-binding domain 254 309 IPR015360 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cone13ag0836 379 CDD UBA1_Rad23_plant 157 206 - -
Cone13ag0836 379 Gene3D - 1 80 - -
Cone13ag0836 379 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Cone13ag0836 379 SUPERFAMILY UBA-like 316 377 IPR009060 GO:0005515(InterPro)
Cone13ag0836 379 Gene3D - 156 206 - -
Cone13ag0836 379 MobiDBLite consensus disorder prediction 80 146 - -
Cone13ag0836 379 FunFam UV excision repair protein RAD23 homolog 156 206 - -
Cone13ag0836 379 SUPERFAMILY XPC-binding domain 250 316 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cone13ag0836 379 MobiDBLite consensus disorder prediction 120 136 - -
Cone13ag0836 379 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515(InterPro)
Cone13ag0836 379 Gene3D - 244 310 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cone13ag0836 379 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 204 IPR015940 -
Cone13ag0836 379 SUPERFAMILY UBA-like 160 213 IPR009060 GO:0005515(InterPro)
Cone13ag0836 379 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515(InterPro)
Cone13ag0836 379 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 332 373 IPR015940 -
Cone13ag0836 379 Pfam UBA/TS-N domain 335 370 IPR015940 -
Cone13ag0836 379 Pfam UBA/TS-N domain 164 201 IPR015940 -
Cone13ag0836 379 NCBIfam UV excision repair protein Rad23 1 378 IPR004806 GO:0006289(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0836 K10839 - - gmx:100809066 528.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0836 Cone-Chr13:7561861 Cone18ag1178 Cone-Chr18:8427419 7.70E-162 dispersed
Cone11ag0321 Cone-Chr11:1563588 Cone13ag0836 Cone-Chr13:7561861 1.83E-158 wgd
Cone13ag0836 Cone-Chr13:7561861 Cone19ag0843 Cone-Chr19:6645581 6.39E-211 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41