Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0845 | ATGCAAGGCTTTAAGCCCACCTCAGCTCCTCCAAATCCTGATCTTTATTTCACTTCTTCCTTCTGTTTCAGGGGAGGAGAAGAAAGTGTAAGAAACGAAACGCGTTTTGAGGATTTTAGAGAGCTTGCACATTCCGCTTCTTCTGCTTCAGCTTTTCATAACGACGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTCTGAAGTCGAGCACTTTCGTTACTCTACCTCTTAACCCACCGTACAGCACCTTCAACACGAATATGGAGTCGTCAGAGATAGTTCACACAGAGCAGCAAATTATGTATAATACAAAGGAGCCATCTACGGCGGCAGTTGCGGTGTCGTCGTTGGGAAACGGGAGCTTTGAGACCTGGGCTGATTCAGCAACAATGGCAGATCACAGTCAGCAGACTGACACTTCTACAGATATTGATACAGATTACAGAAATCAGTTCCATGGAGTTCATCATGGAGCACTAGTAGCTGTCGATTCCGTGGATCAGTCTTTGACAAGAGTTGGTGACCAAAAAACTCTTCGAAGGCTTGCCCAGAATCGAGAAGCAGCGCGGAAAAGCCGTCTAAGAAAGAAAGCTTATGTCCAGCAGCTTGAGAACAGTCGTCGTCGCCTCACACAACTCGAACAAGAGCTTCTACGGGCCCGCCAACAAGGCATTTTCATTACACCTGGACATTCTGGAGACCATGCTTCTTCAATTCCCGGAAACAGGGCCTTAGCATTTGATCTAGAGTATGCGCGTTGGCTCAATGACCACCAAAGACTTATCAATGATCTAAGATCGGCCGTTAGTTCTCGAATGAGTGATAATGAATTACATTTCCTAGTGGATAATGTAATGTCACATTATGAAGAATTATTCAGTCTAAAGAGCATAGCTGCTAAAGCTGATGTATTTCACATGCTTTCCGGCATGTGGAAAACTCCAGCCGAGCGCTGCTTCATGTGGTTAGGTGGATTCCGTTCCTCCGAGCTCCTAAAGATTCTTGGGAACCATCTTGATCCATTAACGGATCAACAGTTGATGGGCATATGCAATCTGCAACAATCCTCGCAACAAGCAGAAGATGCATTGTCACAAGGAATGGAAGTTTTGCAACAGTCTTTAGTTGAGACGCTTTCTTCGAGCACTATGGGTTCAGATATTTCCGGAAATGTTGCGGAGTACATGGGTCAAATGGCGATCGCAATGGGGAAGCTTGCTACACTCGAGAATTTCCTTCACCAGGCTGATCTTTTGAGGCAGCAAACTCTACAACAGATGCATCGGATCTTGACTACTAGACAAGCCGCTCGGGCCCTACTTGTTATCAGCGATTATATGTCACATCTCCGAGCGCTAAGTTCGTTATGGTTAGCGCGGCCGCGAGAGTGA | 1395 | 45.95 | MQGFKPTSAPPNPDLYFTSSFCFRGGEESVRNETRFEDFRELAHSASSASAFHNDDAVDLSPSSVFSLKSSTFVTLPLNPPYSTFNTNMESSEIVHTEQQIMYNTKEPSTAAVAVSSLGNGSFETWADSATMADHSQQTDTSTDIDTDYRNQFHGVHHGALVAVDSVDQSLTRVGDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRRRLTQLEQELLRARQQGIFITPGHSGDHASSIPGNRALAFDLEYARWLNDHQRLINDLRSAVSSRMSDNELHFLVDNVMSHYEELFSLKSIAAKADVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNHLDPLTDQQLMGICNLQQSSQQAEDALSQGMEVLQQSLVETLSSSTMGSDISGNVAEYMGQMAIAMGKLATLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYMSHLRALSSLWLARPRE | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7594448 | 7597219 | - | Conep13aG0087100.1 | Cone13ag0845 | 451232 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0845 | 464 | Pfam | Seed dormancy control | 263 | 336 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cone13ag0845 | 464 | Gene3D | - | 177 | 226 | - | - | |
Cone13ag0845 | 464 | CDD | bZIP_HBP1b-like | 178 | 230 | - | - | |
Cone13ag0845 | 464 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 181 | 196 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0845 | 464 | Pfam | bZIP transcription factor | 178 | 218 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0845 | 464 | Coils | Coil | 197 | 224 | - | - | |
Cone13ag0845 | 464 | FunFam | BZIP family transcription factor | 177 | 226 | - | - | |
Cone13ag0845 | 464 | SUPERFAMILY | Leucine zipper domain | 178 | 221 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0845 | 464 | SMART | brlzneu | 174 | 259 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0845 | 464 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 176 | 218 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone13ag0845 | 464 | ProSiteProfiles | DOG1 domain profile. | 245 | 461 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cone13ag0845 | 464 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 99 | 464 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0845 | Cone-Chr13:7594448 | Cone5ag0986 | Cone-Chr5:4227304 | 1.72E-148 | dispersed | |
Cone13ag0845 | Cone-Chr13:7594448 | Cone19ag0849 | Cone-Chr19:6680349 | 2.70E-298 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44637 | PF03462 | PCRF | 6.60E-26 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0845 | K14431 | - | vvi:100249239 | 609.757 |