Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0845 ATGCAAGGCTTTAAGCCCACCTCAGCTCCTCCAAATCCTGATCTTTATTTCACTTCTTCCTTCTGTTTCAGGGGAGGAGAAGAAAGTGTAAGAAACGAAACGCGTTTTGAGGATTTTAGAGAGCTTGCACATTCCGCTTCTTCTGCTTCAGCTTTTCATAACGACGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTCTGAAGTCGAGCACTTTCGTTACTCTACCTCTTAACCCACCGTACAGCACCTTCAACACGAATATGGAGTCGTCAGAGATAGTTCACACAGAGCAGCAAATTATGTATAATACAAAGGAGCCATCTACGGCGGCAGTTGCGGTGTCGTCGTTGGGAAACGGGAGCTTTGAGACCTGGGCTGATTCAGCAACAATGGCAGATCACAGTCAGCAGACTGACACTTCTACAGATATTGATACAGATTACAGAAATCAGTTCCATGGAGTTCATCATGGAGCACTAGTAGCTGTCGATTCCGTGGATCAGTCTTTGACAAGAGTTGGTGACCAAAAAACTCTTCGAAGGCTTGCCCAGAATCGAGAAGCAGCGCGGAAAAGCCGTCTAAGAAAGAAAGCTTATGTCCAGCAGCTTGAGAACAGTCGTCGTCGCCTCACACAACTCGAACAAGAGCTTCTACGGGCCCGCCAACAAGGCATTTTCATTACACCTGGACATTCTGGAGACCATGCTTCTTCAATTCCCGGAAACAGGGCCTTAGCATTTGATCTAGAGTATGCGCGTTGGCTCAATGACCACCAAAGACTTATCAATGATCTAAGATCGGCCGTTAGTTCTCGAATGAGTGATAATGAATTACATTTCCTAGTGGATAATGTAATGTCACATTATGAAGAATTATTCAGTCTAAAGAGCATAGCTGCTAAAGCTGATGTATTTCACATGCTTTCCGGCATGTGGAAAACTCCAGCCGAGCGCTGCTTCATGTGGTTAGGTGGATTCCGTTCCTCCGAGCTCCTAAAGATTCTTGGGAACCATCTTGATCCATTAACGGATCAACAGTTGATGGGCATATGCAATCTGCAACAATCCTCGCAACAAGCAGAAGATGCATTGTCACAAGGAATGGAAGTTTTGCAACAGTCTTTAGTTGAGACGCTTTCTTCGAGCACTATGGGTTCAGATATTTCCGGAAATGTTGCGGAGTACATGGGTCAAATGGCGATCGCAATGGGGAAGCTTGCTACACTCGAGAATTTCCTTCACCAGGCTGATCTTTTGAGGCAGCAAACTCTACAACAGATGCATCGGATCTTGACTACTAGACAAGCCGCTCGGGCCCTACTTGTTATCAGCGATTATATGTCACATCTCCGAGCGCTAAGTTCGTTATGGTTAGCGCGGCCGCGAGAGTGA 1395 45.95 MQGFKPTSAPPNPDLYFTSSFCFRGGEESVRNETRFEDFRELAHSASSASAFHNDDAVDLSPSSVFSLKSSTFVTLPLNPPYSTFNTNMESSEIVHTEQQIMYNTKEPSTAAVAVSSLGNGSFETWADSATMADHSQQTDTSTDIDTDYRNQFHGVHHGALVAVDSVDQSLTRVGDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRRRLTQLEQELLRARQQGIFITPGHSGDHASSIPGNRALAFDLEYARWLNDHQRLINDLRSAVSSRMSDNELHFLVDNVMSHYEELFSLKSIAAKADVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNHLDPLTDQQLMGICNLQQSSQQAEDALSQGMEVLQQSLVETLSSSTMGSDISGNVAEYMGQMAIAMGKLATLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYMSHLRALSSLWLARPRE 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7594448 7597219 - Conep13aG0087100.1 Cone13ag0845 451232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0845 464 Pfam Seed dormancy control 263 336 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone13ag0845 464 Gene3D - 177 226 - -
Cone13ag0845 464 CDD bZIP_HBP1b-like 178 230 - -
Cone13ag0845 464 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0845 464 Pfam bZIP transcription factor 178 218 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0845 464 Coils Coil 197 224 - -
Cone13ag0845 464 FunFam BZIP family transcription factor 177 226 - -
Cone13ag0845 464 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0845 464 SMART brlzneu 174 259 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0845 464 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 218 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0845 464 ProSiteProfiles DOG1 domain profile. 245 461 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone13ag0845 464 PANTHER TRANSCRIPTION FACTOR TGA9 99 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0845 Cone-Chr13:7594448 Cone5ag0986 Cone-Chr5:4227304 1.72E-148 dispersed
Cone13ag0845 Cone-Chr13:7594448 Cone19ag0849 Cone-Chr19:6680349 2.70E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44637 PF03462 PCRF 6.60E-26 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0845 K14431 - vvi:100249239 609.757