Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0848 ATGGCAGAAATGGGTTTCTTCTTCTCTTTCCTCCTCTTCGCCCTTCTCTACGCCTCTCAACTTGCCCACTCTCGGATTTTACCTCCCCAGACCTCTACCACGGCGGTTCTCGATGTGGCGGCCACGATTCACAGCACCCAGCGAGTTTTCGCGTTAGACTCTAAAACCGGCGACGAATTCAAACAACAAGAAAAGAGTGTCCCCTCAGATTCGTCGCCGTTTAGTTTCCAGCTACAGTCGAGGATTTCGCTGCGGAAACCTTCGAATAATGACTACAAGTCACTGACGTTAGCTCGACTCGCTCGTGACTCAGACCGAGTCAGATCTTTAACTACGAGGTTGGATCTAGCTGCTAGAGGGATTTCCGGGTCGGATCTGAAACCGGTTGATATACGCAATGTTGGGTCACAGTTCGGAGGTGAGGATTTGCAGGGTCCGATTGTTTCCGGAGCGAGTCAGGGAAGCGGCGAGTACTTCTCCCGAGTCTCGATCGGTAAGCCACCGAGTCCGGTTTACATGGTACTAGATACGGGCAGTGACGTCAACTGGGTACAATGCGCACCCTGCGCCGATTGCTACCAGCAAGCCGACCCCATCTTCGAGCCGGCTTCCTCGTCCTCTTTCTCCCCTCTCTCTTGCCAAACTTCACAATGCAAGTCTCTAGACGTGTCGGAATGTCACAACGGTTCTTGTCTCTACGAGGTTTCCTACGGCGACGGCTCCTACACCGTTGGCGATTTCGTCACGGAGACCATCACGCTCGGCTCGGTTTCAGTCGACAATGTTGCAATTGGTTGCGGACATAACAACGAAGGATTGTTCATCGGCGCTGCTGGCTTGCTTGGGCTCGGGGGCGGGTCACTATCGTTTCCTTCGCAGCTCAATGCAACGACGTTTTCGTATTGTCTCGTGGACCGAGACTCAGACTCAGCTTCAACTTTAGACTTTGGATCCCCTATATCTCCTGACGCCGTGACTGCACCGTTGCACCGAAATTCGGTCCTCGACACGTTTTATTATCTCGGCCTTACCGGAATCAGCGTCAGCGGCGAGATGCTTCCGATTCCTAAAAAATCCTTCGAGATGGACACTAGCGGATATGGCGGGATAATCATAGACTCCGGCACGGCGGTGACTCGGTTGCAAACGGACGCGTATAACGCGCTCCGAGATGCGTTCGTTAGGGGGACGCATAACTTGCAGTCTACTAACGGCGTTGCTCTGTTCGATACGTGTTACGACCTGTCGTCCAAGTCGAAAGTGGAGGTGCCGACAGTGTCGTTTCATTTTGGGGATGGGAAAGTGTTGCCGTTACCCGCGAAAAATTACCTGATACCGATCGATTCCGATGGGACGTTCTGTTTAGCCTTTGCGCCGACTGGTTCGACGCTGTCGATTATAGGGAACGTGCAACAGCAGGGGACACGTGTCAGTTTCGACCTTGCTAATTCTCTCGTTGGGTTCTCGCCCAATAAATGTTAG 1482 52.83 MAEMGFFFSFLLFALLYASQLAHSRILPPQTSTTAVLDVAATIHSTQRVFALDSKTGDEFKQQEKSVPSDSSPFSFQLQSRISLRKPSNNDYKSLTLARLARDSDRVRSLTTRLDLAARGISGSDLKPVDIRNVGSQFGGEDLQGPIVSGASQGSGEYFSRVSIGKPPSPVYMVLDTGSDVNWVQCAPCADCYQQADPIFEPASSSSFSPLSCQTSQCKSLDVSECHNGSCLYEVSYGDGSYTVGDFVTETITLGSVSVDNVAIGCGHNNEGLFIGAAGLLGLGGGSLSFPSQLNATTFSYCLVDRDSDSASTLDFGSPISPDAVTAPLHRNSVLDTFYYLGLTGISVSGEMLPIPKKSFEMDTSGYGGIIIDSGTAVTRLQTDAYNALRDAFVRGTHNLQSTNGVALFDTCYDLSSKSKVEVPTVSFHFGDGKVLPLPAKNYLIPIDSDGTFCLAFAPTGSTLSIIGNVQQQGTRVSFDLANSLVGFSPNKC 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7602218 7603940 - Conep13aG0087400.1 Cone13ag0848 451235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0848 493 ProSiteProfiles Peptidase family A1 domain profile. 158 489 IPR033121 -
Cone13ag0848 493 Gene3D Acid Proteases 318 493 IPR021109 -
Cone13ag0848 493 SUPERFAMILY Acid proteases 152 493 IPR021109 -
Cone13ag0848 493 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 173 184 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone13ag0848 493 FunFam Probable aspartic protease At2g35615 140 317 - -
Cone13ag0848 493 PANTHER ASPARTYL PROTEASES 52 493 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone13ag0848 493 FunFam Aspartyl protease family protein 2 318 493 - -
Cone13ag0848 493 Pfam Xylanase inhibitor C-terminal 339 489 IPR032799 -
Cone13ag0848 493 Gene3D Acid Proteases 140 317 IPR021109 -
Cone13ag0848 493 Pfam Xylanase inhibitor N-terminal 158 318 IPR032861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0848 K22683 - - csv:101222856 691.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0848 Cone-Chr13:7602218 Cone19ag0272 Cone-Chr19:1911710 9.17E-179 dispersed
Cone13ag0848 Cone-Chr13:7602218 Cone19ag0851 Cone-Chr19:6687782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002030 1 2 1 2 2 2 4 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 66